Additional file 3

This file contains tables summarizing the ancestral gene reconstruction by Count v10.04. The ancestral gene content was reconstructed for the entire data set, as well as for subsets of orthologous gene families corresponding to different functional groups including (i) CAZymes; (ii) plant cell wall degrading enzymes (PCWDEs); (iii) PCWDEs involved in the degradation of cellulose, hemicellulose, lignin, pectin, starch and inulin; (iv) peptidases; (v) peptidase inhibitors; (vi) transporters; (vii) transporters involved in the exchange of carbohydrates; (viii) transporters involved in the exchange of amino acids; (ix) transporters involved in the exchange of lipids; (x) transporters involved in the exchange of nitrogen; and (xi) effectors.

本文件包含由Count v10.04完成的祖先基因重建结果汇总表格。本次重建针对全数据集，以及对应不同功能类别的直系同源基因家族子集展开，所涵盖的功能类别包括：(i) 碳水化合物活性酶（CAZymes）；(ii) 植物细胞壁降解酶（PCWDEs）；(iii) 参与纤维素、半纤维素、木质素、果胶、淀粉及菊粉降解的植物细胞壁降解酶；(iv) 肽酶；(v) 肽酶抑制剂；(vi) 转运蛋白；(vii) 参与碳水化合物转运的转运蛋白；(viii) 参与氨基酸转运的转运蛋白；(ix) 参与脂质转运的转运蛋白；(x) 参与氮素转运的转运蛋白；(xi) 效应因子。