Datasets for "BCTI: A Bayesian network-based method for revealing critical transitions in complex biological systems"

This repository contains the datasets used in the manuscript"BCTI: A Bayesian Network Inference Method for Quantitatively and QualitativelyQuantifying Critical Transitions of Complex Biological Systems". TCGA datasets:- COAD, LUAD, and THCA gene expression datasets used in this study.- The original data are publicly available from the UCSC Xena platform. Single-cell dataset:- Human embryonic lung development single-cell RNA-seq dataset used in this study.- The original data are available in the Gene Expression Omnibus (GEO) under accession code GSE215895. Benchmark datasets:- dream4: DREAM network dataset.- IRMA: IRMA synthetic yeast gene regulatory network dataset.- SOS: E. coli SOS repair network dataset. The benchmark datasets are publicly available from their original publicationsand are included here to facilitate reproducibility of the analyses.本仓库包含论文《BCTI：一种用于定量与定性量化复杂生物系统临界转变的贝叶斯网络推断方法》中所使用的数据集。 TCGA数据集：本研究使用COAD、LUAD及THCA基因表达数据集。原始数据可从UCSC Xena平台公开获取。 单细胞数据集：本研究使用人类胚胎肺发育单细胞RNA测序数据集。其原始数据已存入基因表达综合数据库（Gene Expression Omnibus，GEO），登录号为GSE215895。 基准数据集： - dream4：DREAM网络数据集 - IRMA：IRMA合成酵母基因调控网络数据集 - SOS：大肠杆菌SOS修复网络数据集 上述基准数据集均可从其原始公开文献获取，本仓库收录这些数据集以助力相关分析的可复现性。