遇见数据集

Similarity of predicted A. butzleri proteins to proteins from other taxa.

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Figshare2015-12-02 更新2026-05-11 收录
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Top matches are derived from Table S3. Predicted Arcobacter butzleri proteins were compared to proteins in the NCBI non-redundant (nr) database by BLASTP. Matches with an Expect (E) value of >1��10?5, an identity of Table S3) and classified by taxon. Individual orders are listed if they constitute >1% of the total.aA total of 1944 loci contained matches to proteins in the nr database, according to the criteria listed above. Percentage values for the defined taxa do not include the 315 loci (13.9% of the 2259 identified loci) for which no homologs were identified.bMultiple strains of the same species (e.g. C. jejuni RM1221 and C. jejuni NCTC 11168) at a given locus were counted once. Percentage values for the defined taxa do not include the 315 loci for which no homologs were identified.

最优匹配结果源自补充表S3。通过BLASTP工具,将预测得到的布氏弓形菌(Arcobacter butzleri)蛋白质序列与NCBI非冗余(non-redundant, nr)数据库中的蛋白质序列进行比对。筛选满足期望(Expect, E)值大于1×10^-5、序列一致性标准详见补充表S3的匹配结果,并按分类单元进行分类。若某一分类阶元占总匹配数的比例超过1%,则单独列出其名称。 a. 根据上述比对标准,共有1944个基因座在nr数据库中找到匹配的蛋白质序列。本次统计的分类单元占比未包含315个未找到同源蛋白质序列的基因座(占已鉴定基因座总数2259个的13.9%)。 b. 同一基因座上的同一物种的多株菌株(如空肠弯曲杆菌C. jejuni RM1221与空肠弯曲杆菌C. jejuni NCTC 11168)仅计数一次。本次统计的分类单元占比未包含315个未找到同源蛋白质序列的基因座。

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2015-12-02
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