Excel spread sheet of 2211 H/S-DE genes (<0.1 FDR).

Columns designate: Ensemble Gene ID; base mean of RNA-seq counts across all samples; log2 fold change between mean of Holstein vs. Sahiwal sample counts; lfcSE (Standard Error of the log fold change); stat (Wald statistic); p value (unadjusted p value for the Wald test); padj (Benjamini-Hochberg adjusted p-value for significance of the Wald test; DESeq2 normalized RNA-seq counts for each of the six Sahwal samples (Sah 1–6) and five Holstein (Hol 1–6); the gene name; an alternative gene name, when applicable; whether RNA-seq counts were consistent across all Sahiwal samples vs. Holstein; Interferon associated genes, as identified in the study of Liu et al. [50] or by GO [37]; description of protein/factor encoded by the gene. Yellow highlight designate genes also modulated in Theileria infected (TBL20) cells. (XLSX)