A biodiversity dataset graph: LACMIP_9951-3_Helicancylus_pilsbryi

Name: A biodiversity dataset graph: LACMIP_9951-3_Helicancylus_pilsbryi
Creator: Zenodo
Published: 2023-01-27T22:47:44+08:00

Zenodo2023-01-27 更新2026-05-26 收录

数据链接：

https://zenodo.org/record/7577642 数据链接链接失效反馈

官方服务：

资源简介：

A biodiversity dataset graph: LACMIP_9951-3_Helicancylus_pilsbryi The intended use of this archive is to facilitate (meta-)analysis of the Helicancylus pilsbryi (Anderson, 1938) - LACMIP 9951.3 - LACM Invertebrate Paleontology - 576cbe09-6484-4f87-b15d-b8a17c90a835 https://www.gbif.org/occurrence/2012640793 (LACMIP_9951-3_Helicancylus_pilsbryi). LACMIP_9951-3_Helicancylus_pilsbryi provides media and a wavefront 3D object model, of amminote specimen Helicancylus pilsbryi (Anderson, 1938) - LACMIP 9951.3 - LACM Invertebrate Paleontology - 576cbe09-6484-4f87-b15d-b8a17c90a835 https://www.gbif.org/occurrence/2012640793 as well as the original digital data/image files that were used to find and build this 3D model. This dataset provides versioned snapshots of the LACMIP_9951-3_Helicancylus_pilsbryi network as tracked by Preston [2,3] between 2023-01-27 and 2023-01-27 using "preston update -u http://ipt.idigbio.org/archive.do?r=lacm-ip". The archive consists of individual files with hexadecimal filenames (e.g., 009d54a6509cbf5eb8168d23edaaa6c05a5ea9bd156c78869414b2356292fb1c) to allow for parallel file downloads. The archive contains three types of files: index files, provenance logs and data files. Index files provide a way to links provenance files in time to establish a versioning mechanism. Provenance files describe how, when, what and where the LACMIP_9951-3_Helicancylus_pilsbryi content was retrieved. For more information, please visit https://preston.guoda.bio or https://doi.org/10.5281/zenodo.1410543 . To retrieve and verify the downloaded LACMIP_9951-3_Helicancylus_pilsbryi biodiversity dataset graph, download all files. Then, extract the archives into a "data" folder. Alternatively, you can use the preston[2] command-line tool to "clone" this dataset using: $ java -jar preston.jar clone --remote https://zenodo.org/record/7577643/files After that, verify the index of the archive by reproducing the following provenance log history: $ java -jar preston.jar history --log tsv hash://sha256/4e0f93cb1fa122c25e853709b3d28ce9d9f898e9fb30c858eb5def0ae4bfc73e http://www.w3.org/ns/prov#wasDerivedFrom hash://sha256/8ad31345ca327f903fe3c6a6df73847635bb82b224977794ce8c76ef483eb96e hash://sha256/8ad31345ca327f903fe3c6a6df73847635bb82b224977794ce8c76ef483eb96e http://www.w3.org/ns/prov#wasDerivedFrom hash://sha256/134e3c2d8978baaa003e8990b442b21a7bb47e9413b86cde11dbe49b5a31504c hash://sha256/134e3c2d8978baaa003e8990b442b21a7bb47e9413b86cde11dbe49b5a31504c http://www.w3.org/ns/prov#wasDerivedFrom hash://sha256/ead72d5f9e65313563da7e3ec7700ff671d77c104323e0d11ce2444eae372b63 hash://sha256/ead72d5f9e65313563da7e3ec7700ff671d77c104323e0d11ce2444eae372b63 http://www.w3.org/ns/prov#wasDerivedFrom hash://sha256/6c8ed9f9f025144e50775eeacbf4274e25bd8f635f61967f2b5761220168fec4 hash://sha256/6c8ed9f9f025144e50775eeacbf4274e25bd8f635f61967f2b5761220168fec4 http://www.w3.org/ns/prov#wasDerivedFrom hash://sha256/3f2005426df734fe242a5b991d4fcb1752eebda005e2d1998e3711469f95ea9e hash://sha256/3f2005426df734fe242a5b991d4fcb1752eebda005e2d1998e3711469f95ea9e http://www.w3.org/ns/prov#wasDerivedFrom hash://sha256/d1a1d4745965e3d9427387c7e3cd2556aec37cd0d76dd8e900cd2ce28d882871 hash://sha256/d1a1d4745965e3d9427387c7e3cd2556aec37cd0d76dd8e900cd2ce28d882871 http://www.w3.org/ns/prov#wasDerivedFrom hash://sha256/ad85a504594151e2c2617ada471fda4d785a2f8be686b49708876f1624956ecb hash://sha256/ad85a504594151e2c2617ada471fda4d785a2f8be686b49708876f1624956ecb http://www.w3.org/ns/prov#wasDerivedFrom hash://sha256/d233af3699e8937aff1d8677676593d500656549cc314ca95a34e4c71623eee1 hash://sha256/d233af3699e8937aff1d8677676593d500656549cc314ca95a34e4c71623eee1 http://www.w3.org/ns/prov#wasDerivedFrom hash://sha256/d5a3f1f3d3d1f83c4a885e757dcc9035785101844ba2b60aa4f6670c9d82b248 urn:uuid:0659a54f-b713-4f86-a917-5be166a14110 http://purl.org/pav/hasVersion hash://sha256/d5a3f1f3d3d1f83c4a885e757dcc9035785101844ba2b60aa4f6670c9d82b248 To check the integrity of the extracted archive, confirm that each line produce by the command "preston verify" produces lines as shown below, with each line including "CONTENT_PRESENT_VALID_HASH". Depending on hardware capacity, this may take a while. $ java -jar preston.jar verify replace wwith preston verify | head -n4 Note that a copy of the java program "preston", preston.jar, is included in this publication. The program runs on java 8+ virtual machine using "java -jar preston.jar", or in short "preston". Files in this data publication: --- start of file descriptions --- -- description of archive and its contents (this file) -- README -- executable java jar containing preston [2,3] v0.5.2. -- preston.jar -- preston archives containing LACMIP_9951-3_Helicancylus_pilsbryi data files, associated provenance logs and a provenance index -- 009d54a6509cbf5eb8168d23edaaa6c05a5ea9bd156c78869414b2356292fb1c 00c9336a267a7ddc8d8fb7321726be5673e6f2edd3dcc0d29e643f1e4053d970 03676f731df9c49d799514aafd6e9a0d4748cf0994ba11733f7b43af502399e5 036e4c720983d8ae2c82c22982e918db744608e25d18cc9ea6ebb26dc747f3dc 03e74a3417241fb1f1932db6d3120dc94212f6b6a190f5a5ece57464c07e5033 049583c4b8037618cc279a846f1b59310971d88fae20bc315dfba7703bc37c4f 050b4ce9bc4a58798faa0d3761181167fcc126093acc184bc5174bba1e397985 06828b0dd6baefc2b1ceb9cc73f8f52bb9067198bbd64af99b1d380fff8591ab 068c952340937bcc9f921cca1c8c619cf14331ce6d83f56afb536aa94d43e4ff 099bcdc0db8ed1a7ca25993d9a8576524ab819e732096967a52fbbe2b5827d62 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f14316ca1ab92962b01aba5c18fb66bd814d6a3ac1d31f2ca6492408ed77002c f33f2bcaf45b5db80ee123e50ccab52b785f3b60b05beb980e4242d4e49a3bdc f3d7065d442dba2046633afe1af146e6d6f1f843f799f989603a1793a898b22f f3e74bda4b7feae4bfb67ea83fd355c44d336c97ab25d01ebc4977b343940f08 f42f9404f43bb703f2eb95781c2dcbc48b284b015fa4d82b7b37b35c8365199d f669e3e298d64218cb99cf00a85371ba9ba9e1b9a256d9ff87e29e13bf794b20 fa77613c87341a2d68d5de94ed81e8c72cb0e39edce02a5534cad4ae45305bf9 fbbefed8d3069d617c17ef80b2a2c9daf5fe3e5ec8fdd052eb0f173d9bc16c20 fdfd1b75cbb4675a55ad735d6cb7476fa4ba602462abfe91fb2b7e8acf084d9e feed70505322b8e88d342adc1b90c4fcb2c9f77c31e36ab5539033f027f84838 --- end of file descriptions --- References [1] Helicancylus pilsbryi (Anderson, 1938) - LACMIP 9951.3 - LACM Invertebrate Paleontology - 576cbe09-6484-4f87-b15d-b8a17c90a835 https://www.gbif.org/occurrence/2012640793 (LACMIP_9951-3_Helicancylus_pilsbryi, http://ipt.idigbio.org/archive.do?r=lacm-ip) accessed from 2023-01-27 to 2023-01-27 with provenance hash://sha256/d5a3f1f3d3d1f83c4a885e757dcc9035785101844ba2b60aa4f6670c9d82b248. [2] https://preston.guoda.bio, https://doi.org/10.5281/zenodo.1410543 . [3] MJ Elliott, JH Poelen, JAB Fortes (2020). Toward Reliable Biodiversity Dataset References. Ecological Informatics. https://doi.org/10.1016/j.ecoinf.2020.101132 This work is funded in part by grant NSF OAC 1839201 and NSF DBI 2102006 from the National Science Foundation.

### 生物多样性数据集图谱：LACMIP_9951-3_Helicancylus_pilsbryi 本数据集档案旨在助力对*Helicancylus pilsbryi*（安德森，1938）——LACMIP 9951.3——LACM无脊椎古生物馆藏——576cbe09-6484-4f87-b15d-b8a17c90a835 对应全球生物多样性信息设施（Global Biodiversity Information Facility, GBIF）条目https://www.gbif.org/occurrence/2012640793（即LACMIP_9951-3_Helicancylus_pilsbryi）开展（元）分析。该数据集包含*Helicancylus pilsbryi*（安德森，1938）——LACMIP 9951.3——LACM无脊椎古生物馆藏——576cbe09-6484-4f87-b15d-b8a17c90a835 对应GBIF条目https://www.gbif.org/occurrence/2012640793的amminote标本的多媒体资源与Wavefront格式3D物体模型，以及用于构建该3D模型的原始数字数据与图像文件。本数据集提供了LACMIP_9951-3_Helicancylus_pilsbryi数据集网络的带版本快照，该快照由Preston工具[2,3]于2023年1月27日通过命令`preston update -u http://ipt.idigbio.org/archive.do?r=lacm-ip`追踪生成。本档案采用十六进制文件名（例如`009d54a6509cbf5eb8168d23edaaa6c05a5ea9bd156c78869414b2356292fb1c`）命名单个文件，以支持并行文件下载。本档案包含三类文件：索引文件、溯源日志与数据文件。索引文件可按时间关联溯源文件，从而构建版本管理机制。溯源日志用于记录LACMIP_9951-3_Helicancylus_pilsbryi数据集内容的获取方式、时间、来源与位置。如需了解更多信息，请访问https://preston.guoda.bio 或https://doi.org/10.5281/zenodo.1410543。如需获取并验证已下载的LACMIP_9951-3_Helicancylus_pilsbryi生物多样性数据集图谱，请下载全部文件并将档案解压至名为`data`的文件夹中。此外，也可通过Preston[2]命令行工具克隆本数据集，执行命令为：`$ java -jar preston.jar clone --remote https://zenodo.org/record/7577643/files`。完成后，可通过复现以下溯源日志历史以验证档案索引：执行命令`$ java -jar preston.jar history --log tsv`，输出内容示例如下： `hash://sha256/4e0f93cb1fa122c25e853709b3d28ce9d9f898e9fb30c858eb5def0ae4bfc73e http://www.w3.org/ns/prov#wasDerivedFrom hash://sha256/8ad31345ca327f903fe3c6a6df73847635bb82b224977794ce8c76ef483eb96e` `hash://sha256/8ad31345ca327f903fe3c6a6df73847635bb82b224977794ce8c76ef483eb96e http://www.w3.org/ns/prov#wasDerivedFrom hash://sha256/134e3c2d8978baaa003e8990b442b21a7bb47e9413b86cde11dbe49b5a31504c` ...（后续哈希链内容按原文完整呈现）如需验证解压后档案的完整性，请执行命令`preston verify`，确认其输出的每一行均包含`CONTENT_PRESENT_VALID_HASH`。根据硬件性能不同，该操作可能耗时较长。执行命令：`$ java -jar preston.jar verify`，或简写为`preston verify | head -n4`。请注意，本出版物中附带了Java程序Preston的可执行文件`preston.jar`。该程序需基于Java 8及以上版本的虚拟机运行，执行命令为`java -jar preston.jar`，也可简写为`preston`。 #### 本数据出版物包含以下文件： --- 文件描述开始 --- -- 档案与内容说明（即本文件） -- `README` -- 包含Preston[2,3] v0.5.2版本的可执行Java Jar包 -- `preston.jar` -- 存储LACMIP_9951-3_Helicancylus_pilsbryi数据文件、关联溯源日志与溯源索引的Preston档案 -- `009d54a6509cbf5eb8168d23edaaa6c05a5ea9bd156c78869414b2356292fb1c` `00c9336a267a7ddc8d8fb7321726be5673e6f2edd3dcc0d29e643f1e4053d970` `03676f731df9c49d799514aafd6e9a0d4748cf0994ba11733f7b43af502399e5` ...（此处省略其余十六进制文件名，完整列表详见原文） --- 文件描述结束 --- #### 参考文献 [1] *Helicancylus pilsbryi*（安德森，1938）——LACMIP 9951.3——LACM无脊椎古生物馆藏——576cbe09-6484-4f87-b15d-b8a17c90a835 对应GBIF条目https://www.gbif.org/occurrence/2012640793（即LACMIP_9951-3_Helicancylus_pilsbryi，来源网址http://ipt.idigbio.org/archive.do?r=lacm-ip），于2023年1月27日获取，溯源哈希为`hash://sha256/d5a3f1f3d3d1f83c4a885e757dcc9035785101844ba2b60aa4f6670c9d82b248`。 [2] https://preston.guoda.bio, https://doi.org/10.5281/zenodo.1410543。 [3] MJ Elliott, JH Poelen, JAB Fortes (2020). Toward Reliable Biodiversity Dataset References. *Ecological Informatics*. https://doi.org/10.1016/j.ecoinf.2020.101132。本研究部分受美国国家科学基金会（National Science Foundation, NSF）的NSF OAC 1839201与NSF DBI 2102006项目资助。

提供机构：

Zenodo

创建时间：

2023-01-27

A biodiversity dataset graph: LACMIP_9951-3_Helicancylus_pilsbryi

资源简介：

相关数据集