MOESM1 of Genetic analysis of teat number in pigs reveals some developmental pathways independent of vertebra number and several loci which only affect a specific side

Additional file 1: Table S1. Information on 1-Mb windows that explained more than 0.4% of the genomic variation as determined by GENSEL. Description: A listing of the information from all 1-Mb windows (defined in SSC and Mb) that exceeded 0.4% of the genomic variation as determined by GENSEL. The number of SNPs within each window (#SNPs), percentage of genomic variation explained by the SNPs on average across all post-burn-in samples (%Var), the frequency at which a 1-Mb window explained more than the average amount of genomic variation (p > Average), the position of the first SNP (map_pos0) and last SNP (map_posn) in the window. The last eight columns pertain to the SNPs within the 1-Mb window with the largest estimated effect: SNP name, location in build 10.2, effect size, standard error of the estimate, frequency of SNP retention in each sample, allele frequency of the B allele in the population, T-test for the effect and simple P-value corresponding to the T-test.附加文件1：表S1。经GENSEL分析，基因组变异解释占比超过0.4%的1 Mb（兆碱基对）窗口信息。 说明：本文件汇总了经GENSEL分析后，所有以SSC和Mb定义且基因组变异解释占比超过0.4%的1 Mb窗口的相关信息，具体包括：各窗口内的单核苷酸多态性（Single Nucleotide Polymorphism, SNP）数量（#SNPs）、所有预烧除（burn-in）阶段后样本中SNP平均解释的基因组变异占比（%Var）、单个1 Mb窗口基因组变异解释量高于平均水平的频率（p > 平均水平），以及窗口内首个SNP（map_pos0）与末个SNP（map_posn）的位置。最后八列对应该1 Mb窗口内估计效应最大的SNP的相关信息：SNP名称、10.2版基因组组装中的位置、效应量、估计值的标准误、各样本中SNP保留频率、群体中B等位基因的等位基因频率、效应的T检验结果，以及该T检验对应的单变量P值。