kmer dictionaries and associated scripts for kmer contaminant detection in Drosophila suzukii sequencing data using Clark program

The compressed archive contains material for performing kmer-based contaminant screening of Drosophila suzukii (or other related Drosophilid species) sequencing data using Clark or Clarkl programs. This includes species discriminating kmer dictionaries (built from cleaned genome assemblies of 29 Drosophila species and 12 common Drosophila commensals or pathogens) and example analysis scripts.

本压缩归档文件包含用于借助Clark程序与Clarkl程序，对斑翅果蝇（Drosophila suzukii）或其他相关果蝇科物种的测序数据开展基于k元组（kmer）的污染物筛查的相关材料。该归档包含由29种果蝇及12种常见果蝇共生菌、病原菌的质控基因组组装序列构建的物种区分性k元组词典，以及示例分析脚本。