Data and R Code for 'Domestication via the commensal pathway in a fish-invertebrate mutualism'

This document contains all data and R code required to replicate the analyses in 'Domestication via the commensal pathway in a fish-invertebrate mechanism' as published in Nature Communications. The R Markdown provided includes descriptions of all variables and the code used for the analysis of the following eight datasets: 1. Transects<br> 2. Census of farms<br> 3. Paired choice experiments<br> 4. Predation experiment 1<br> 5. Predation experiment 2<br> 6. Timed observations<br> 7. Farm algae composition<br> 8. Longfin damselfish body condition In addition, the R Markdown also includes descriptions of all variables for two additional datasets: 9. Estimates of mysid swarm density<br> 10. Mysid waste excretion and nutrient availability A PDF version of the R Markdown with all output is also provided. Please see the methods section of the associated manuscript for further information on data collection and analysis procedures. Author contributions to data collection and analysis: RMB, JMC, ZLC, TLS &amp; WEF collected the data; WEF, RMB, JMC, ZLC &amp; AM implemented the analyses. Correspond with: [e-mail]本文件包含复现发表于《自然·通讯》的论文《鱼类-无脊椎动物共生途径下的驯化机制》中各项分析所需的全部数据与R代码。所提供的R标记文档（R Markdown）包含所有变量说明，以及用于分析以下8个数据集的代码：1. 样带调查；2. 养殖场普查；3. 双选实验；4. 捕食实验1；5. 捕食实验2；6. 定时观测；7. 养殖场藻类组成；8. 长鳍雀鲷身体条件。此外，该R标记文档还附带了另外2个数据集的全部变量说明：9. 糠虾集群密度估算；10. 糠虾粪便排泄与养分有效性。本文件同时提供了包含全部分析输出结果的R标记文档PDF版本。如需了解数据采集与分析流程的详细信息，请参阅相关论文的方法部分。数据采集与分析的作者贡献如下：RMB、JMC、ZLC、TLS与WEF负责数据采集；WEF、RMB、JMC、ZLC与AM负责分析实施。通讯邮箱：[e-mail]