Additional file 2 of Transposable element expansion and low-level piRNA silencing in grasshoppers may cause genome gigantism

Additional file 2: Table S1. Proportion of repetitive elements in the genome. Table S2. Comparative analysis of repeat sequences in two species. Table S3. List of 41 TEs shared in the two species (copy number >500). Table S4. Annotations of Class I retrotransposon transcript (TPM>1). Table S5. Retrotransposon transcript quantification matrix (TPM normalization) of L. migratoria. Table S6. Retrotransposon transcript quantification matrix (TPM normalization) of A. rhodopa. Table S7. Abundance of piRNAs corresponding to 41 shared TEs (RPM normalization). Table S8. Abundance of sense piRNAs corresponding to L. migratoria retrotransposon transcripts (RPM normalization). Table S9. Abundance of antisense piRNAs corresponding to L. migratoria retrotransposon transcripts (RPM normalization). Table S10. Abundance of sense piRNAs corresponding to A. rhodopa retrotransposon transcripts (RPM normalization). Table S11. Abundance of antisense piRNAs corresponding to A. rhodopa retrotransposon transcripts (RPM normalization). Table S12. List of K2P divergence and abundance of 41 shared-TEs.

附加文件2：表S1。基因组重复序列元件占比。表S2：两个物种重复序列的比较分析。表S3：两个物种共有的41个转座元件（Transposable Element, TE）（拷贝数>500）的列表。表S4：I类逆转录转座子转录本注释（转录每百万reads，Transcripts Per Million, TPM>1）。表S5：东亚飞蝗（Locusta migratoria, L. migratoria）的逆转录转座子转录本定量矩阵（TPM标准化）。表S6：蔷薇长管蚜（Acyrthosiphon rhodopa, A. rhodopa）的逆转录转座子转录本定量矩阵（TPM标准化）。表S7：对应41个共有TE的Piwi互作RNA（Piwi-interacting RNA, piRNA）丰度（每百万映射reads数，Reads Per Million mapped reads, RPM标准化）。表S8：对应东亚飞蝗逆转录转座子转录本的有义piRNA丰度（RPM标准化）。表S9：对应东亚飞蝗逆转录转座子转录本的反义piRNA丰度（RPM标准化）。表S10：对应蔷薇长管蚜逆转录转座子转录本的有义piRNA丰度（RPM标准化）。表S11：对应蔷薇长管蚜逆转录转座子转录本的反义piRNA丰度（RPM标准化）。表S12：41个共有TE的Kimura 2参数（Kimura 2-parameter, K2P）分化度及丰度列表。