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Additional file 5 of Single-cell ATAC-seq signal extraction and enhancement with SCATE

NIAID Data Ecosystem2026-03-11 收录

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https://figshare.com/articles/dataset/Additional_file_5_of_Single-cell_ATAC-seq_signal_extraction_and_enhancement_with_SCATE/12610448 数据链接链接失效反馈

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Additional file 5 Table S4. List of mouse bulk DNase-seq samples in BDDB.

应用场景：

创建时间：

2020-07-03

单细胞ATAC-seq

乳腺上皮细胞分化调控

The mammary epithelial cell (MEC) system is a bi-layered ductal epithelial network consisting of luminal and basal cells, maintained by a lineage of stem and progenitor cell populations. Here, we used

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The effect of beta-glucan - induced trained immunity on the epigenetic profile of bone marrow granulocyte-macrophage progenitors (GMP) and neutrophils

训练免疫表观遗传学

单细胞ATAC-seq

Induction of trained immunity by beta-glucan affects myeloid cells and their bone marrow progenitors. In particular, broad epigenetic alterations in trained myeloid cells have been demonstrated. In

NIAID Data Ecosystem40

Signac mitochondrial vignette datasets

单细胞ATAC-seq

突变体分析

Raw mtscATAC-seq data (GSM4472969; GSM4238432) was produced by Lareau and Ludwig et al. (2020). Data was mapped to hg38 (masked NUMT) using 10x Cell Ranger ATAC (v2.1.0). Mitochondrial mutations we

Zenodo2026-04-20 更新30

3D chromatin hubs as regulatory units of identity and survival in acute T-cell leukemia [scATAC-Seq]

急性T细胞白血病染色质3D结构

单细胞ATAC-seq

Cancer progression is associated with genetic and epigenetic aberrations that affect chromatin 3D organization in the nucleus. Changes in loop extrusion or phase separation alter the relationships bet

NIAID Data Ecosystem40

Datasets for Lyu, Hoang, and Santiago, et al. 2021

发育基因调控

单细胞ATAC-seq

Supplemental datasets 1-14 for Lyu, Hoang, and Santiago, et al. 2021. Dataset 1: Number of cells of each type identified at each developmental age using scATAC-Seq in the mouse retina. Dataset 2: Cell

NIAID Data Ecosystem40

Additional file 5 of Single-cell ATAC-seq signal extraction and enhancement with SCATE

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