Genomic Rabbit GBS (genotyping-by-sequencing) Libraries

Complexity reduced genomic library of wild European Rabbits (Oryctolagus
cuniculus) caught in the Flinders Ranges, South Australia. The data
were generated following the GBS (genotyping by sequencing, Elshire et
al 2011). The data collection consists of genomic data generated from a
population of rabbits sampled in 1995, before RHDV came to Australia,
and another dataset from the same population sampled in 2012, after 17
years of RHD-driven selection on the rabbit genomes. This data
collection is currently in development and another dataset generated
with the same method will be added for another population. This dataset
will consist of samples from rabbits that survived RHD infection
(=resistant individuals) and a comparable dataset from rabbits that were
deadly infected. A third dataset will be added that consists of RHD
virus sequencing data. Virus will be isolated from rabbits that had died
from RHD, from rabbit blood samples and vectors (flies). The data are
currently organised across several databases, but will be consolidated
into one database upon project completion.The collection contains raw data (.fq) as well as sequence data in a
range of formats (.bam, .sam, .fa, .fasta, .tsv, .txt, .xls).

采自澳大利亚南弗林德斯山脉的野生欧洲兔（Oryctolagus cuniculus）简化基因组文库。本数据集采用GBS（genotyping by sequencing，测序分型，Elshire等，2011）方法生成。数据集包含两部分基因组数据：其一为1995年（兔出血症病毒（Rabbit Hemorrhagic Disease Virus, RHDV）传入澳大利亚之前）采集的兔群基因组数据；其二为该兔群经17年RHDV驱动的基因组选择后，于2012年采集的基因组数据。本数据集集合目前仍处于研发完善阶段，后续将新增采用相同方法构建的另一兔群数据集：该数据集将包含兔出血症病毒感染存活个体（即抗性个体）的样本，以及对应致死感染兔群的对照数据集。此外还将新增第三类数据集，即兔出血症病毒测序数据，病毒将从死于RHD的兔只、兔血液样本及媒介生物（蝇类）中分离得到。当前数据分散存储于多个数据库中，待项目完成后将整合至单一数据库。本数据集集合包含原始数据（.fq格式）以及多种格式的序列数据，涵盖.bam、.sam、.fa、.fasta、.tsv、.txt、.xls格式。