Path-MGCN: pathway activity based spatial cluster analyses of spatial transcriptomic data

This data repository contains the processed data used for Path-MGCN spatial cluster and the spatial clustering results of Path-MGCN.The spatial transcriptomics datasets used in Path-MGCN are public available:(1) 10x Visium spatial transcriptomics dataset of human dorsolateral prefrontal cortex (DLPFC): http://spatial.libd.org/spatialLIBD;(2) 10x Visium spatial transcriptomics dataset of human breast cancer: https://support.10xgenomics.com/spatial-gene-expression/datasets/1.1.0/V1_Breast_Cancer_Block_A_Section_1;(3) Stereo-seq dataset of mouse olfactory bulb tissue: https://github.com/JinmiaoChenLab/SEDR_analyses;(4) KEGG PATHWAY: https://www.kegg.jp/kegg/pathway.html.

本数据集仓库包含用于Path-MGCN空间聚类的预处理数据，以及Path-MGCN的空间聚类结果。Path-MGCN所使用的空间转录组学数据集均为公开可获取数据集：(1) 人类背外侧前额叶皮层（DLPFC）的(10x Visium)空间转录组数据集：http://spatial.libd.org/spatialLIBD；(2) 人类乳腺癌的(10x Visium)空间转录组数据集：https://support.10xgenomics.com/spatial-gene-expression/datasets/1.1.0/V1_Breast_Cancer_Block_A_Section_1；(3) 小鼠嗅球组织的(Stereo-seq)数据集：https://github.com/JinmiaoChenLab/SEDR_analyses；(4) KEGG通路（KEGG PATHWAY）数据集：https://www.kegg.jp/kegg/pathway.html。