Virus Sequences and Data Tables related to the Cenote Human Virome Database v1.1

CHVD_virus_sequences_v1.1.tar.gz= full nucleotide sequences of 45,033 dereplicated (95% ANI, 85% AF) virus OTUs. version 1.1<br> <br> CHVD_virus_core_sequences_v1.1.tar.gz = nucleotide subsequences of CHVD_virus_sequences_v1.1, trimmed down to virus cores CHVD_clustered_mash99_v1.tar.gz = nucleotide sequences of virus contigs identified in the study LIGHTLY dereplicated. There will be lots of redundant sequence in this compared to the "CHVD_virus_sequences_v1.1".<br> <br> human_anelloviruses_not_in_genbank1.tar.gz = full length anellovirus genomes without close cognates in GenBank phage_encoded_spacers_v1.0.tar.gz = sequences of spacers encoded by phage from the Cenote Human Virome Database<br> <br> HV3_table1_bioprojects_w_body_location.xlsx = table of bioproject information<br> <br> HV3_table2_master_table.xlsx = table with lots of information for each virus OTU <br> HV3_table3_mash_CHVD_genbank.xlsx = table of cognates between full length GenBank sequences and Cenote Human Virome Database sequences<br> <br> HV3_table4_mash_CHVD_GVD.xlsx = table of cognates between Gregory et al (Gut Virome Database) sequences and Cenote Human Virome Database sequences<br> <br> HV3_table5_viromeqc_alignment99.xlsx = table with viromeQC and % alignment to Cenote Human Virome Database (clustered@99%) for ~ 1000 VLP sequencing runs from SRA HV3_table6_phage_crisprs.xlsx = table with phage-phage CRISPR match network and putative bacterial hosts HV3_table7_vOTUs_multiple_bodysites.xlsx = table of virus OTUs prevalent in more than 1 body site HV3_table8_case-control_runs.xlsx = table with case/control information for all runs for each disease state analyzed unclassified_virus_vcontact2_network.cys = network file generated by VContact2 with unclassified virus genomesCHVD_virus_sequences_v1.1.tar.gz：包含45033个经去冗余处理（95%平均核苷酸一致性（ANI, Average Nucleotide Identity）、85%比对分数（AF, Alignment Fraction））的病毒操作分类单元（OTU, Operational Taxonomic Unit）的完整核苷酸序列，版本1.1 CHVD_virus_core_sequences_v1.1.tar.gz：经修剪至病毒核心区域的CHVD_virus_sequences_v1.1的核苷酸子序列 CHVD_clustered_mash99_v1.tar.gz：本研究中鉴定得到的病毒重叠群（contig）的核苷酸序列，经轻度去冗余处理。相较于“CHVD_virus_sequences_v1.1”，该数据集包含大量冗余序列 human_anelloviruses_not_in_genbank1.tar.gz：未在GenBank中找到近缘同源序列的全长环转病毒（anellovirus）基因组 phage_encoded_spacers_v1.0.tar.gz：来自Cenote人类病毒组数据库的噬菌体所编码的间隔序列（spacer） HV3_table1_bioprojects_w_body_location.xlsx：包含生物项目信息的表格 HV3_table2_master_table.xlsx：包含每个病毒OTU详细信息的总表 HV3_table3_mash_CHVD_genbank.xlsx：全长GenBank序列与Cenote人类病毒组数据库序列的同源匹配关系表格 HV3_table4_mash_CHVD_GVD.xlsx：Gregory等人构建的肠道病毒组数据库（Gut Virome Database, GVD）序列与Cenote人类病毒组数据库序列的同源匹配关系表格 HV3_table5_viromeqc_alignment99.xlsx：包含约1000条来自SRA（Sequence Read Archive）的病毒样颗粒（VLP, Virus-like Particle）测序运行数据的viromeQC质量评估结果，以及与以99%聚类度聚类的Cenote人类病毒组数据库的比对百分比信息的表格 HV3_table6_phage_crisprs.xlsx：包含噬菌体-噬菌体CRISPR匹配网络及推定细菌宿主的表格 HV3_table7_vOTUs_multiple_bodysites.xlsx：可在多个身体部位检出的病毒OTU的相关信息表格 HV3_table8_case-control_runs.xlsx：包含所有分析的疾病状态下各测序运行的病例-对照组信息的表格 unclassified_virus_vcontact2_network.cys：由VContact2生成的未分类病毒基因组的网络文件