Additional file 1 of 3D chromatin-based variant-to-gene maps across 57 human cell types reveal the cellular and genetic architecture of autoimmune disease susceptibility

Figshare2025-12-09 更新2026-04-08 收录

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Additional file 1. Spreadsheets of Supplementary Tables S1-S13. Table S1. Data resources of 57 cell types. Table S2. 16 autoimmune disorders. Table S3. Details of 4 cell type-specific eQTL databases. Table S4. Full LDSC analysis result. Table S5. Full variant-to-gene mapping result. Table S6. Full KEGG pathway enrichment analysis result. Table S7. Full GO-term enrichment analysis result. Table S8. Details of 258 loci used for eQTL analysis. Table S9. Shared cell types and trait specific eGenes between eQTLs datasets and V2G. Table S10. High PP.H4.abf colocalization results with coloc.abf. Table S11. High PP.H3.abf colocalization hits results with coloc.susie. Table S12. Colocalization analysis of FDFT1 on locus chr8:9921161-11972641. Table S13. Immune cells donors and mAbs details

提供机构：

Seale, Patrick; Sharma, Prabhat; Kulkarni, Nikhil N.; Pahl, Matthew C.; Cabrera, Emylette Cruz; Levings, Megan K.; Cook, Laura; Kaestner, Klaus H.; Zemel, Babette S.; Mount, Zachary; Grant, Struan F. A.; Pippin, James A.; Thomas, Rajan M.; Anderson, Stewart A.; Yang, Wenli; Wagley, Yadav; O’Brien, Joan M.; Wells, Andrew D.; Titchenell, Paul M.; Chesi, Alessandra; Romberg, Neil; Trang, Khanh B.; Jermusyk, Ashley; Su, Chun; Hoskins, Jason W.; Brown, Kevin M.; Amundadottir, Laufey T.; Hankenson, Kurt D.; Rachimi, Suzanna; Xu, Mai

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2025-12-09