Additional file 1: of The kinome of pineapple: catalog and insights into functions in crassulacean acid metabolism plants

Table S1. Kinase domain annotation of 758 pineapple protein kinases. Table S2. Family classification of pineapple protein kinases and their related information. Table S3. The numbers of pineapple PK genes in different families. Table S4. Domain organization of 758 pineapple PKs. Table S5. List of 70 pineapple protein kinases containing multiple kinase domains. Table S6. Pineapple PK genes generated by segmental duplication. Table S7. Pineapple PK genes generated by tandem duplication. Table S8. Segmental and tandem duplication events and Ka/Ks values of pineapple protein kinases. Table S9. Alternative splicing types of PK genes in pineapple. Table S10. Average FPKM expression values of 758 pineapple kinase genes in 14 different tissues among developmental stages. Table S11. 494 genes in ten clusters with different expression patterns during development. Table S12. Average FPKM expression values of 758 pineapple kinase genes during 24-h in green leaf tip. Table S13. Average FPKM expression values of 758 pineapple kinase genes during 24-h in white leaf base. Table S14. Genes in ten clusters with different expression patterns. Table S15. Expression values of pineapple kinase genes generated by duplication during 24-h in both green and white leaf tissues. Table S16. The orthologs of 20 pineapple PKs in Arabidopsis. (XLSX 336 kb)

表S1. 758个菠萝蛋白激酶的激酶结构域注释
表S2. 菠萝蛋白激酶的家族分类及其相关信息
表S3. 不同家族中菠萝蛋白激酶（Protein Kinase，PK）基因的数量
表S4. 758个菠萝蛋白激酶的结构域组成情况
表S5. 70个含多个激酶结构域的菠萝蛋白激酶列表
表S6. 由片段重复产生的菠萝蛋白激酶基因
表S7. 由串联重复产生的菠萝蛋白激酶基因
表S8. 菠萝蛋白激酶的片段重复与串联重复事件及Ka/Ks值
表S9. 菠萝中蛋白激酶基因的可变剪接类型
表S10. 14个不同发育阶段组织中758个菠萝激酶基因的平均FPKM表达值
表S11. 发育过程中具有不同表达模式的10个聚类中的494个基因
表S12. 绿色叶尖组织中758个菠萝激酶基因24小时内的平均FPKM表达值
表S13. 白色叶基组织中758个菠萝激酶基因24小时内的平均FPKM表达值
表S14. 具有不同表达模式的10个聚类中的基因
表S15. 经重复产生的菠萝激酶基因在绿色与白色叶组织中24小时内的表达量
表S16. 20个菠萝蛋白激酶在拟南芥中的直系同源基因
（XLSX格式，文件大小336 KB）