Data for: Phylogeny and divergence times of suckers (Cypriniformes: Catostomidae) inferred from Bayesian total-evidence analyses of molecules, morphology, and fossils

In support of the manuscript by Bagley, Mayden, & Harris (2018), this accession provides the raw data files used in our study. Specifically, the accession contains the following five zipped archives: 1) an archive containing the full folder of files used for our PartitionFinder analysis (including input and output files); 2) an archive of NEXUS-formatted DNA sequence alignments used during our BEAST analysis (modified to contain varying patterns of mtDNA sites, shown in Table 4 of the manuscript); 3) an archive containing our Bayesian maximum clade credibility (MCC) time tree inferred from final analyses using the FBD model in BEAST (based on 5000 post-burnin trees); 4) an archive of NEXUS alignments formatted for MrBayes, and used during our MrBayes analyses; and 5) an archive of Bayesian consensus trees (gene trees) from MrBayes (corresponding to results shown in Figure 2 of the manuscript).

Users are referred to the manuscript, an extensive Appendix, and supplementary files available on the journal website for additional information on how the data were generated and interpreted.

REFERENCES

Bagley JC, Mayden RL, Harris PM. (2018) Phylogeny and divergence times of suckers (Cypriniformes: Catostomidae) inferred from Bayesian total-evidence analyses of molecules, morphology, and fossils. PeerJ.

为支撑Bagley、Mayden与Harris（2018）的学术论文，本存档集提供了本研究使用的全部原始数据文件。具体而言，本存档集包含以下五个压缩归档包：
1) 包含PartitionFinder分析所用完整文件文件夹的归档包（含输入与输出文件）；
2) 用于BEAST分析的NEXUS格式DNA序列比对文件归档包（经修改以适配不同模式的线粒体DNA（mtDNA）位点，对应论文表4内容）；
3) 包含我们基于BEAST中FBD（Fossilized Birth-Death）模型、通过最终分析推断得到的贝叶斯最大分支可信度（MCC）时间树的归档包（基于5000株预烧后树）；
4) 专为MrBayes分析格式化、并用于MrBayes分析的NEXUS格式比对文件归档包；
5) 来自MrBayes的贝叶斯一致性树（基因树）归档包（对应论文图2的结果）。

如需了解数据生成与解读的更多细节，请参阅该论文、详尽的附录以及期刊官网发布的补充文件。

REFERENCES

Bagley JC, Mayden RL, Harris PM. (2018) 基于分子、形态与化石的贝叶斯全证据分析推断的吸口鱼（鲤形目：吸口鲤科）系统发育与分化时间. PeerJ.