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MOESM7 of Using whole-genome SNP data to reconstruct a large multi-generation pedigree in apple germplasm

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DataCite Commons2020-08-26 更新2024-07-28 收录
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https://springernature.figshare.com/articles/MOESM7_of_Using_whole-genome_SNP_data_to_reconstruct_a_large_multi-generation_pedigree_in_apple_germplasm/11497437
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Additional file 7: Table S6. Groups of grandparents, parent and offspring inferred with less than 100 Mendelian Errors (ME), indicating the preferred names of the offspring (Offspring), parent (Parent) and grandparents (GrandParent 1, GrandParent 2), i.e. parent couple of the missing parent, and their MUNQ (MUNQ O, MUNQ P, MUNQ GP1, MUNQ GP2), the number of ME in the 25 K SNP set (# ME 25 K) and in the 253 K SNP set (# ME 253 K), presupposed parents of the offspring (Parent1 from Literature, Parent 2 from Literature) and source of this documentation (Source_parents), consistency of inferred parent with literature (Ped_consistency), consistency of dates, i.e. offspring younger than its inferred grandparent(s), on the basis of documented dates indicated in Additional file 1: Table S1 (Date consistent GP1 and Date consistent GP2).

补充文件7:表S6。该表收录了孟德尔错误(Mendelian Errors, ME)计数少于100的祖父母-父母-后代组合,明确了后代(Offspring)、父母(Parent)以及祖父母(GrandParent 1、GrandParent 2,即缺失亲本的亲本对)的推荐命名方式;同时包含各组合的MUNQ指标(MUNQ O、MUNQ P、MUNQ GP1、MUNQ GP2)、25K单核苷酸多态性(Single Nucleotide Polymorphism, SNP)数据集与253K SNP数据集内的孟德尔错误数量(分别记为# ME 25 K与# ME 253 K)、后代的预设亲本(文献来源亲本1、文献来源亲本2,即Parent1 from Literature、Parent 2 from Literature)、本记录的来源(Source_parents)、推断亲本与文献记载的一致性(Ped_consistency),以及基于补充文件1:表S1中记录的日期验证的日期一致性:即后代年龄小于其推断祖父母的一致性情况(Date consistent GP1、Date consistent GP2)。
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figshare
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2020-01-03
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