Additional file 5 of Differential somatic coding variant landscapes between laser microdissected luminal epithelial cells from canine mammary invasive ductal solid carcinoma and comedocarcinoma

Additional file 5. Table S2. Amplifications and deletions identified by VarScan 2 in canine invasive ductal solid carcinoma and comedocarcinoma compared with normal samples. Table S3A. Somatic variants and predicted pathogenicity in canine invasive ductal. solid carcinoma. Table S3B. Somatic variants and predicted pathogenicity in canine invasive ductal comedocarcinoma. Table S4A. Structural variants in canine invasive ductal solid carcinoma. Table S4B. Structural variants in canine invasive ductal. comedocarcinoma. Table S5. Mutual genes with variants in canine invasive ductal solid carcinoma and comedocarcinoma. Table S6A. KEGG pathways in canine invasive ductal solid carcinoma. Table S6B. KEGG pathways in canine invasive ductal. comedocarcinoma. Table S7. Driver genes identified by OncodriveCLUSTL from canine invasive ductal solid carcinoma and comedocarcinoma. Table S8. List of genes with non-silent variants in canine invasive ductal solid carcinoma and comedocarcinoma compared with COSMIC-CGC and KEGG databases.

补充文件5。表S2：经VarScan 2鉴定的犬浸润性导管实性癌与粉刺癌中，相较于正常样本的扩增与缺失变异。表S3A：犬浸润性导管实性癌中的体细胞变异及其预测致病性。表S3B：犬浸润性导管粉刺癌中的体细胞变异及其预测致病性。表S4A：犬浸润性导管实性癌中的结构变异。表S4B：犬浸润性导管粉刺癌中的结构变异。表S5：犬浸润性导管实性癌与粉刺癌中均携带变异的共有基因。表S6A：犬浸润性导管实性癌中的KEGG通路（Kyoto Encyclopedia of Genes and Genomes）。表S6B：犬浸润性导管粉刺癌中的KEGG通路（Kyoto Encyclopedia of Genes and Genomes）。表S7：经OncodriveCLUSTL从犬浸润性导管实性癌与粉刺癌中鉴定得到的驱动基因。表S8：相较于COSMIC-CGC（Catalogue of Somatic Mutations in Cancer-Cancer Gene Census）与KEGG数据库，犬浸润性导管实性癌与粉刺癌中携带非同义变异的基因列表。