Additional file 2: Tables S1–S16. of Global histone modification profiling reveals the epigenomic dynamics during malignant transformation in a four-stage breast cancer model

Table S1. Differential expression genes between L and P6 cell lines. Table S2. Differential expression genes between LT and P6 cell lines. Table S3. Differential expression genes between LTR and P6 cell lines. Table S4. DEGs between LT and L cell lines. Table S5. DEGs between LTR and LT cell lines. Table S6. DEGs between TCGA breast cancer and normal tissues (≥threefolds). Table S7. Genes overlapped between DEGs of TCGA and transformed cell lines. Table S8. Genes localized in H3K9me3 small LOCKs of HMC-p6. Table S9. Genes localized in decreased H3K9me2 boundaries in HMC-LT. Table S10. Genes localized in decreased H3K9me2 boundaries in HMC-LTR. Table S11. Uniprot cancer-related genes in the boundaries of decreased H3K9me2 LOCKs (compared to HMC-p6). Table S12. Genes overlapped between LT_NC/LT_shKDM3A and LT/P6 DEGs. Table S13. DEGs between LT_NC and LT_shKDM3a cells. Table S14. Genes overlapped between LTR_NC/LTR_siKDM3A and LTR/P6 DEGs. Table S15. DEGs between LTR_NC and LTR_siKDM3a cells. Table S16. Primer and siRNA sequences. (XLS 1135 kb)