Predicted A. nasoniae phage regions on the main chromosome, as estimated by PHASTER
收藏资源简介:
Predicted regions of phage origin on the A.nasoniae main chromosome as estimated by PHASTER (Arndt et al 2016). Column 1: Region identifierColumn 2: Length of region, kbColumn 3: PHASTER estimate of completeness (score)Column 4: Position on chromosomeColumn 5: Estimated # of protein coding ORFs in regionColumn 6: Estimated # of ORFs encoding core phage proteinsColumn 7: Estimated # of proteins classed as Hypothetical functionColumn 8: Estimated # of proteins classed as bacterial in origin (rather than phage core).Column 9: Presence/Absence of an attachment siteColumn 10: Identity of 3' Flanking ORFColumn 11: Identity of 5' Flanking ORFColumn 12: Number of nanopore long reads covering phage regionColumn 13: Length of longest read covering phage region.Arndt D, Grant JR, Marcu A, Sajed T, Pon A, Liang Y, Wishart DS. 2016. PHASTER: a better, faster version of the PHAST phage search tool. Nucleic Acids Res 44:W16–W21.
本数据集为基于PHASTER(Arndt等,2016)预测的A.nasoniae主染色体上的噬菌体起源区域。各列信息如下: 第1列:区域标识符 第2列:区域长度(千碱基对,kb) 第3列:PHASTER预测的区域完整度(得分) 第4列:染色体上的位置 第5列:区域内预测的蛋白质编码开放阅读框(Open Reading Frame,ORF)数量 第6列:编码噬菌体核心蛋白的ORF预测数量 第7列:被归类为假设功能蛋白的蛋白质预测数量 第8列:被归类为细菌起源(而非噬菌体核心蛋白)的蛋白质预测数量 第9列:附着位点存在/缺失情况 第10列:3'侧翼ORF的注释信息 第11列:5'侧翼ORF的注释信息 第12列:覆盖该噬菌体区域的纳米孔长读长测序读段(nanopore long read)数量 第13列:覆盖该噬菌体区域的最长读段长度 参考文献:Arndt D、Grant JR、Marcu A、Sajed T、Pon A、Liang Y、Wishart DS. 2016. PHASTER:一款性能更优、运行更快捷的PHAST噬菌体搜索工具. 《核酸研究(Nucleic Acids Research)》,44:W16–W21.




