The assembled transcriptome of the tidal reeds and freshwater reeds in Yellow River Delta responding to salt stress

Transcriptome assemblyWe used Trinity software for transcriptome assembly. The basic process of assembly is shown in the following link: http://trinityrnaseq.github.io .The results of transcriptional assembly were as follows:1.Trinity.fasta: FASTA sequences of Trinity assembly2.cluster_ all.fasta: The sequence obtained by removing redundancy in the TRINITY.fasta by corset clustering.3.unigene.fasta: Select the longest transcript of each gene from the cluster_ all.fasta to store in FASTA format as a unigene of the gene.4.Sampled_ trinity.fasta: Some examples of Trinity.fasta sequence, and the format of the sequence is the same as the Trinity.fasta.5.Sampled_ cluster_ all.fasta: Some examples of Clusters_ all.fasta sequence, and the format of the sequence is the same as the cluster_ all.fasta.6.Sampled_ unigene.fasta: Some examples of the unigene.fasta sequence, and the format of the sequence is the same as the unigene.fasta.

转录组组装：本研究采用Trinity软件开展转录组组装工作，组装的基本流程详见如下链接：http://trinityrnaseq.github.io。转录组组装的最终结果如下：
1. Trinity.fasta：Trinity组装得到的FASTA格式序列文件
2. cluster_all.fasta：通过corset聚类对Trinity.fasta进行去冗余后得到的序列文件
3. unigene.fasta：从cluster_all.fasta中选取每个基因的最长转录本，以FASTA格式存储，作为该基因的单基因（unigene）序列
4. Sampled_trinity.fasta：Trinity.fasta的序列示例文件，序列格式与Trinity.fasta保持一致
5. Sampled_cluster_all.fasta：cluster_all.fasta的序列示例文件，序列格式与cluster_all.fasta保持一致
6. Sampled_unigene.fasta：unigene.fasta的序列示例文件，序列格式与unigene.fasta保持一致