Additional file 2: of Identification of a cold-tolerant locus in rice (Oryza sativa L.) using bulked segregant analysis with a next-generation sequencing strategy

Table S1. The PSST of T-pool and S-pool. Table S2. Sequences of specific primers for PSST candidate genes. Table S3. Sequences of specific primers for SNP loci in LOC_Os06g39750. Table S4. Heading time, plant height, panicle number, and grain yield per plant of parents and RIL population in 2014, 2015 and 2016. Table S5. Coefficients of correlation (r) among PSST and PSSN in 2014, 2015 and 2016. Table S6. QTLs for PSSN of rice detected in 3 years. Table S7. Summary of Seq-BSA data for each sample. Table S8. Annotation information of predicted genes for PSST. Table S9. nsSNPs between DN422 and KY131 along with their S-pool and T-pool. Table S10. Information of SNP/InDel in LOC_Os06g39740 and LOC_Os06g39750. Table S11. Haplotype of LOC_Os06g39750 in RIL population and mean PSST of each RIL. Table S12. The Arabidopsis homologous genes of LOC_Os06g39750. (XLS 174 kb)

附表S1：T池与S池的PSST
附表S2：PSST候选基因的特异性引物序列
附表S3：LOC_Os06g39750基因内SNP位点的特异性引物序列
附表S4：2014、2015及2016年双亲及重组自交系（Recombinant Inbred Line, RIL）群体的抽穗期、株高、穗数与单株籽粒产量
附表S5：2014、2015及2016年PSST与PSSN间的相关系数（r）
附表S6：三年间检测到的水稻PSSN数量性状位点（Quantitative Trait Locus, QTL）
附表S7：各样本的Seq-BSA（测序-集群分离分析法，Sequencing-Bulked Segregant Analysis）数据汇总
附表S8：PSST候选预测基因的注释信息
附表S9：DN422与KY131间的非同义单核苷酸多态性（non-synonymous single nucleotide polymorphism, nsSNP）及其对应S池与T池信息
附表S10：LOC_Os06g39740与LOC_Os06g39750基因内的SNP/InDel信息
附表S11：RIL群体中LOC_Os06g39750的单倍型及各株系的平均PSST值
附表S12：LOC_Os06g39750的拟南芥同源基因
（XLS格式，文件大小174 KB）