The Global Structure Of Marine Cleaning Mutualistic Networks
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# Global-Cleaning-Networks The data sets available here are parts of the following article: Quimbayo JP, Cantor M, Dias MS, Grutter AS, Gingins S, Becker JHA, Floeter SR. (2018) The global structure of marine cleaning mutualism networks. Global Ecology and Biogeography. DOI: 10.1111/geb.12780. <br> Description We combined field and literature data to test if recurrent patterns in mutualistic networks—nestedness,<br> modularity—describe the distributions of marine cleaning interactions. Nested network structures suggest <br> some cleaner species interact with many clients while the others clean fewer, predictable subsets of these clients; <br> modular network structures suggest cleaners and clients interact with defined, densely-connected subsets of species. All datasets are binary matrices indicating cleaning interaction between cleaner species (columns) <br> and client species (rows) in 28 marine habitats across of 11 marine biogeographical provinces defined for reef fish fauna.<br> These were the Caribbean, the Southwestern, Central, North and Eastern Atlantic, the Western Indian,<br> the Central Indo-Pacific and the Southwestern, Central, Northeastern and Tropical Eastern Pacific. Each element of these matrices equal 1 when the cleaner species i interacts with the client species j, <br> and 0 otherwise. A cleaning event is defined as the observation of a cleaner removing ectoparasites, <br> diseased tissue, and/or mucus from the body surface, gills or buccal cavity of the clients. Data are provided in the form of comma separated values files (csv), one for each of the 28 localities.<br> Please refer to Table S1 in the electronic supplementary material of this article for further details <br> If you use any dataset please cite the article above and the original reference for the data <br> set as described below. CARIBBEAN PROVINCE File: Barbados.cvs<br> Reference: Whiteman EA, Côté IM. 2002 <br> Cleaning activity of two Caribbean cleaning gobies: intra- and interspecific comparisons. <br> J. Fish Biol. 60, 1443–1458. (doi:10.1006/jfbi.2002.1947) File: Bonaire.cvs<br> Reference: Wicksten MK. 1998 <br> Behavior of cleaners and their client fishes at Bonaire Netherlands Antilles. <br> J. Nat. Hist. 32, 13–30. File: Curacao.cvs<br> Reference: Titus, B.M., Vondriska, C. & Daly, M. 2017 & This study<br> Comparative behavioural observations demonstrate the “cleaner” shrimp <em>Periclimenes </em><em>yucatanicus</em> engages in true <br> symbiotic cleaning interactions. <br> Royal Society Open Science, 4, 170078. File: Tobago.cvs<br> Reference: Dunkley, K., Cable J. & Perkins S.E. 2018 & This study <br> The selective cleaning behavior of juvenile blue-headed wrasse (<em>Thalassoma bifasciatum</em>) in the Caribbean. <br> Behavioural Processes. 147: 5–12. File: StCroix.cvs<br> Reference: Johnson WS, Ruben P. 1988 <br> Cleaning behavior of <em>Bodiunus </em><em>rufus</em><em>, Thalassomu </em><em>bifasciatum</em><em>, Gobiosoma </em><em>evelynae</em><em>, and Periclimenes </em><em>pedersoni</em> along a depth gradient at Salt River Submarine Canyon, St . Croix. Environ. Biol. Fishes 23, 225–232. SOUTHWESTERN ATLANTIC File: Abrolhos.cvs<br> Reference: Sazima C. 2002 <br> Atividade de limpeza de duas espécies sintópicas de peixes limpadores e <br> diversidade de seus clientes em Abrolhos, Bahia. File: Noronha.cvs<br> Reference: Francini-Filho RB, Sazima I. 2007 & This study<br> A comparative study of cleaning activity of two reef fishes at Fernando de Noronha Archipelago, Tropical West Atlantic. <br> Environ. Biol. Fishes 83, 213–220. (doi:10.1007/s10641-007-9322-6) File: Rocas.cvs<br> Reference: Quimbayo JP, Nunes LT, Ozekoski R, Floeter SR, Morais RA, Fontoura L, Bonaldo RM, Ferreira CEL, Sazima I. 2017<br> Cleaning interactions at the only atoll in the South Atlantic. <br> Environ. Biol. Fishes 100, 865–875. (doi:10.1007/s10641-017-0612-3) File: SantaCatarina.cvs<br> Reference:Quimbayo, J.P., Schlickmann, O.C., Floeter, S.R. & Sazima I 2018. <br> Cleaning interactions at the southern limit of tropical reef fishes in the Western Atlantic. <br> Environmental Biology of Fishes. doi: 10.1007/s10641-018-0768-5. File: StPaulsRocks.cvs<br> Reference: This study; Quimbayo JP, Cantor M, Dias MS, Grutter AS, Gingins S, Becker JHA, Floeter SR.<br> The global structure of marine cleaning mutualism File: Trindade.cvs<br> Reference: This study; Quimbayo JP, Cantor M, Dias MS, Grutter AS, Gingins S, Becker JHA, Floeter SR.<br> The global structure of marine cleaning mutualism CENTRAL ATLANTIC File: Ascension.cvs<br> Reference: Morais RA, Brown J, Ferreira CEL, Floeter SR, Quimbayo JP, Rocha LA, Sazima I. 2017 <br> Mob rulers and part-time cleaners: two reef fish associations at the isolated Ascension Island. <br> J. Mar. Biol. Assoc. United Kingdom 97, 799–811. (doi:10.1017/S0025315416001041). NORTH ATLANTIC File: Banyuls.cvs <br> Reference: Zander CD, Sötje I. 2002 <br> Seasonal and geographical differences in cleaner fish activity in the Mediterranean Sea. <br> Helgol. Mar. Reser 55, 232–241. (doi:10.1007/s101520100084) File: Azores.cvs<br> Reference: Narvaez P, Furtado M, Neto A, Moniz I, Azevedo J, Soares M. 2015 <br> Temperate facultative cleaner wrasses selectively remove ectoparasites from their client-fish in the Azores. <br> Mar. Ecol. Prog. Ser. 540, 217–226. (doi:10.3354/meps11522) EASTERN ATLANTIC File: Canarias.cvs<br> Reference: Van Tassell JL, Brito A, Bortone SA. 1994 <br> Cleaning Behavior among marine fishes and invertebrates in the Canary Islands. <br> Cybium 18, 117–127. File: CapeVerde.cvs<br> Reference: Quimbayo JP, Floeter SR, Noguchi R, Rangel CA, Gasparini JL, Sampaio CLS, Ferreira CEL, Rocha LA. 2012<br> Cleaning mutualism in Santa Luzia (Cape Verde Archipelago) and São Tomé Islands, Tropical Eastern Atlantic. Mar. <br> Biodivers. Rec. 5, e118. (doi:10.1017/S175526721200108X) File: Principe.cvs<br> Reference: This study; Quimbayo JP, Cantor M, Dias MS, Grutter AS, Gingins S, Becker JHA, Floeter SR.<br> The global structure of marine cleaning mutualism <br> File: SaoTome.cvs<br> Reference: Quimbayo JP, Floeter SR, Noguchi R, Rangel CA, Gasparini JL, Sampaio CLS, Ferreira CEL, Rocha LA. 2012<br> Cleaning mutualism in Santa Luzia (Cape Verde Archipelago) and São Tomé Islands, Tropical Eastern Atlantic. <br> Mar. Biodivers. Rec. 5, e118. (doi:10.1017/S175526721200108X) WESTERN INDIAN<br> File: RedSea.cvs<br> Reference: Barbu, L., Guinand, C., Bergmüller, R., Alvarez, N. & Bshary, R. 2011 & This study<br> Cleaning wrasse species vary with respect to dependency on the mutualism and behavioural adaptations in interactions. <br> Animal Behaviour, 82, 1067–1074. CENTRAL INDO-PACIFIC File: KimbeBay.cvs<br> Reference 1: Becker, J.H.A. 2006 <br> Interactions between cleaner shrimp and their client fishes on coral reefs. <br> Ph.D. thesis, The University of Queensland, St Lucia, Queensland, Australia, 154 pp. Reference 2: Grutter A.S. & Feeney W.E. 2016 <br> Equivalent cleaning in a juvenile facultative and obligate cleaning wrasse: an insight into the evolution of cleaning in labrids? <br> Coral Reefs. 35: 991–997. doi:10.1007/s00338-016-1460-x File: LizardIsland.cvs<br> Reference 1: Becker, J.H.A. & Grutter, A.S. 2004 <br> Cleaner shrimp do clean. <br> Coral Reefs, 23, 515–520. Reference 2: Grutter, A.S. & Poulin, R. 1998 <br> Intraspecific and interspecific relationships between host size and the abundance of parasitic larval gnathiid isopods<br> on coral reef fishes. <br> Marine Ecology Progress Series, 164, 263–271. SOUTHWESTERN PACIFIC File: AlthorpeIsland.cvs<br> Reference: Shepherd, S.A., Teale, J. & Muirhead, D. 2005<br> Cleaning symbiosis among inshore fishes at Althorpe Island, South Australia and elsewhere. <br> Transactions of the Royal Society of South Australia, 129, 193–201. File: NewZealand.cvs<br> Reference: Ayling, A. M. & Grace, R. V. 1971<br> Cleaning symbiosis among New Zealand fishes. <br> New Zealand Journal of Marine and Freshwater Research, 5, 205–218. NORTHEASTERN PACIFIC File: LaJolla.cvs<br> Reference: Hobson, E.S. 1971<br> Cleaning symbiosis among California inshore fishes. <br> Fishery Bulletin, 69, 491–523. TROPICAL EASTERN PACIFIC File: Galápagos.cvs<br> Reference: This study; Quimbayo JP, Cantor M, Dias MS, Grutter AS, Gingins S, Becker JHA, Floeter SR.<br> The global structure of marine cleaning mutualism File: Gorgona.cvs<br> Reference 1: Rodríguez-Moreno M. 2005<br> Interacciones y patrones diarios de actividad de limpieza en peces de un arrecife coralino de la Isla Gorgona. <br> Departamento de Biologia, BSc thesis, Universidad del Valle, Cali-Colombia. Reference 2: Quimbayo, J.P., & Zapata, F.A. 2018 <br> Cleaning interactions by gobies on a Tropical Eastern Pacific coral reef. <br> Journal of Fish Biology. doi:10.1111/jfb.13573. File: Malpelo.cvs<br> Quimbayo, J.P., Dias, M.S., Schlickmann, O.C. & Mendes, T.C. 2017 <br> Fish cleaning interactions on a remote island from the Tropical Eastern Pacific.<br> Marine Biodiversity, 47, 603–608. <br> All R codes for reproducing analyses are available from the authors on request. Any additional queries should be directed to the corresponding author <br> Juan P. Quimbayo (quimbayo.j.p@gmail.com) The release of this data does not exempt those who reuse the data from <br> following community norms for scholarly communication, in particular from citation<br> of this paper and the original data authors as detailed above.
# 全球清洁共生网络数据集 本页面提供的数据集源自下述论文： Quimbayo JP, Cantor M, Dias MS, Grutter AS, Gingins S, Becker JHA, Floeter SR. (2018) 海洋清洁共生网络的全球结构. 《全球生态与生物地理学》. DOI: 10.1111/geb.12780. ## 数据集说明 本研究整合野外调查与文献数据，旨在验证共生网络的两类经典模式——嵌套性（nestedness）与模块性（modularity）——是否能够解释海洋清洁互作的分布格局。嵌套式网络结构意味着部分清洁生物类群可与大量宿主鱼类互动，而其余清洁类群仅与这些宿主中的可预测子集发生清洁行为；模块化网络结构则表明清洁生物与宿主鱼类仅在特定的、内部连接紧密的物种子集中产生互动。 所有数据集均为二元矩阵，用于表征11个基于礁栖鱼类划分的海洋生物地理省中，28个海洋生境里清洁生物类群（列）与宿主鱼类（行）之间的清洁互作关系。这11个生物地理省分别为：加勒比海、大西洋西南部、大西洋中部、大西洋北部、大西洋东部、西印度洋、中印度-太平洋、太平洋西南部、太平洋中部、太平洋东北部以及热带东太平洋。 矩阵中每个元素的取值为1时，表示清洁生物类群i与宿主鱼类j存在互作关系；取值为0则代表二者无清洁互作。本研究将清洁事件定义为：观察到清洁生物从宿主的体表、鳃部或口咽腔中移除体外寄生虫、病变组织以及/或黏液的行为。 数据集以逗号分隔值文件（CSV）形式提供，共28个，分别对应28个采样点。详细信息请参见本文电子补充材料中的表S1。 若使用本数据集，请引用上述论文以及下述各数据集对应的原始文献。 ### 加勒比海生物地理省 文件：Barbados.csv 参考文献：怀特曼 EA, 科特 IM. 2002 两种加勒比清洁虾虎鱼的清洁行为：种内与种间比较. 《鱼类生物学杂志》, 60: 1443–1458. (DOI: 10.1006/jfbi.2002.1947) 文件：Bonaire.csv 参考文献：威克斯滕 MK. 1998 荷属安的列斯博奈尔岛清洁生物与宿主鱼类的行为. 《自然历史杂志》, 32: 13–30. 文件：Curacao.csv 参考文献：蒂图斯 BM, 冯德里斯卡 C, 戴利 M. 2017 与本研究 比较行为观察表明“清洁”虾<em>尤氏清洁虾（Periclimenes yucatanicus）</em>可形成真正的共生清洁互作. 《皇家学会开放科学》, 4: 170078. 文件：Tobago.csv 参考文献：邓克利 K, 凯布尔 J, 珀金斯 SE. 2018 与本研究 加勒比海幼蓝头锦鱼<em>Thalassoma bifasciatum</em>的选择性清洁行为. 《行为过程》, 147: 5–12. 文件：StCroix.csv 参考文献：约翰逊 WS, 鲁本 P. 1988 圣克罗伊岛盐河海底峡谷沿深度梯度的<em>Bodianus rufus</em>、<em>Thalassoma bifasciatum</em>、<em>Gobiosoma evelynae</em>与<em>Periclimenes pedersoni</em>的清洁行为. 《鱼类环境生物学》, 23: 225–232. ### 大西洋西南部生物地理省 文件：Abrolhos.csv 参考文献：萨齐马 C. 2002 巴西巴伊亚州阿布洛霍斯群岛两种同域清洁鱼类的清洁活动及其宿主多样性. 文件：Noronha.csv 参考文献：弗兰西尼-菲略 RB, 萨齐马 I. 2007 与本研究 热带西大西洋费尔南多-迪诺罗尼亚群岛两种礁栖鱼类的清洁行为比较研究. 《鱼类环境生物学》, 83: 213–220. (DOI: 10.1007/s10641-007-9322-6) 文件：Rocas.csv 参考文献：昆巴约 JP, 努内斯 LT, 泽科斯基 R, 弗洛特 SR, 莫赖斯 RA, 丰图拉 L, 博纳尔多 RM, 费雷拉 CEL, 萨齐马 I. 2017 南大西洋唯一环礁的清洁互作. 《鱼类环境生物学》, 100: 865–875. (DOI: 10.1007/s10641-017-0612-3) 文件：SantaCatarina.csv 参考文献：昆巴约 JP, 施利克曼 OC, 弗洛特 SR, 萨齐马 I. 2018 西大西洋热带礁栖鱼类分布南界的清洁互作. 《鱼类环境生物学》. DOI: 10.1007/s10641-018-0768-5. 文件：StPaulsRocks.csv 参考文献：本研究; 昆巴约 JP, 坎特 M, 迪亚斯 MS, 格鲁特 AS, 金金斯 S, 贝克尔 JHA, 弗洛特 SR. 海洋清洁共生网络的全球结构. 文件：Trindade.csv 参考文献：本研究; 昆巴约 JP, 坎特 M, 迪亚斯 MS, 格鲁特 AS, 金金斯 S, 贝克尔 JHA, 弗洛特 SR. 海洋清洁共生网络的全球结构. ### 大西洋中部生物地理省 文件：Ascension.csv 参考文献：莫赖斯 RA, 布朗 J, 费雷拉 CEL, 弗洛特 SR, 昆巴约 JP, 罗查 LA, 萨齐马 I. 2017 统治者与兼职清洁者：偏远阿森松岛的两种礁栖鱼类共生关系. 《英国海洋生物协会汇刊》, 97: 799–811. (DOI: 10.1017/S0025315416001041). ### 大西洋北部生物地理省 文件：Banyuls.csv 参考文献：赞德 CD, 泽特 I. 2002 地中海清洁鱼类活动的季节与地理差异. 《赫尔戈兰海洋研究》, 55: 232–241. (DOI: 10.1007/s101520100084) 文件：Azores.csv 参考文献：纳瓦埃斯 P, 富尔塔多 M, 内托 A, 穆尼兹 I, 阿泽维多 J, 索阿雷斯 M. 2015 亚速尔群岛温带兼性清洁隆头鱼选择性移除宿主鱼类的体外寄生虫. 《海洋生态学进展系列》, 540: 217–226. (DOI: 10.3354/meps11522) ### 大西洋东部生物地理省 文件：Canarias.csv 参考文献：范塔塞尔 JL, 布里托 A, 博顿 SA. 1994 加那利群岛海洋鱼类与无脊椎动物的清洁行为. 《西比亚姆》, 18: 117–127. 文件：CapeVerde.csv 参考文献：昆巴约 JP, 弗洛特 SR, 野口 R, 兰热尔 CA, 加斯帕里尼 JL, 桑帕约 CLS, 费雷拉 CEL, 罗查 LA. 2012 热带东大西洋圣卢西亚（佛得角群岛）与圣多美岛的清洁共生关系. 《海洋生物多样性记录》, 5: e118. (DOI: 10.1017/S175526721200108X) 文件：Principe.csv 参考文献：本研究; 昆巴约 JP, 坎特 M, 迪亚斯 MS, 格鲁特 AS, 金金斯 S, 贝克尔 JHA, 弗洛特 SR. 海洋清洁共生网络的全球结构. 文件：SaoTome.csv 参考文献：昆巴约 JP, 弗洛特 SR, 野口 R, 兰热尔 CA, 加斯帕里尼 JL, 桑帕约 CLS, 费雷拉 CEL, 罗查 LA. 2012 热带东大西洋圣卢西亚（佛得角群岛）与圣多美岛的清洁共生关系. 《海洋生物多样性记录》, 5: e118. (DOI: 10.1017/S175526721200108X) ### 西印度洋生物地理省 文件：RedSea.csv 参考文献：巴布 L, 吉南 C, 贝格缪勒 R, 阿尔瓦雷斯 N, 巴沙里 R. 2011 与本研究 清洁隆头鱼物种对共生关系的依赖程度及其互动中的行为适应性存在差异. 《动物行为》, 82: 1067–1074. ### 中印度-太平洋生物地理省 文件：KimbeBay.csv 参考文献1：贝克尔 JHA. 2006 珊瑚礁清洁虾与宿主鱼类的互作关系. 昆士兰大学博士学位论文，圣卢西亚，澳大利亚昆士兰州，154页. 参考文献2：格鲁特 AS, 菲尼 WE. 2016 幼体兼性与专性清洁隆头鱼的等效清洁行为：对隆头鱼科清洁行为演化的启示. 《珊瑚礁》, 35: 991–997. DOI:10.1007/s00338-016-1460-x 文件：LizardIsland.csv 参考文献1：贝克尔 JHA, 格鲁特 AS. 2004 清洁虾确实会进行清洁行为. 《珊瑚礁》, 23: 515–520. 参考文献2：格鲁特 AS, 普林 R. 1998 珊瑚礁鱼类宿主体型与寄生颚虱幼体丰度的种内与种间关系. 《海洋生态学进展系列》, 164: 263–271. ### 西南太平洋生物地理省 文件：AlthorpeIsland.csv 参考文献：谢泼德 SA, 蒂尔 J, 缪尔黑德 D. 2005 南澳大利亚奥尔托普岛及其他区域近岸鱼类的清洁共生关系. 《南澳大利亚皇家学会汇刊》, 129: 193–201. 文件：NewZealand.csv 参考文献：艾尔廷 AM, 格蕾丝 RV. 1971 新西兰鱼类的清洁共生关系. 《新西兰海洋与淡水研究杂志》, 5: 205–218. ### 东北太平洋生物地理省 文件：LaJolla.csv 参考文献：霍布森 ES. 1971 加利福尼亚近岸鱼类的清洁共生关系. 《渔业公报》, 69: 491–523. ### 热带东太平洋生物地理省 文件：Galápagos.csv 参考文献：本研究; 昆巴约 JP, 坎特 M, 迪亚斯 MS, 格鲁特 AS, 金金斯 S, 贝克尔 JHA, 弗洛特 SR. 海洋清洁共生网络的全球结构. 文件：Gorgona.csv 参考文献1：罗德里格斯-莫雷诺 M. 2005 戈尔戈纳岛珊瑚礁鱼类的清洁互作与日常活动模式. 哥伦比亚卡利德尔瓦莱大学生物学系理学学士学位论文. 参考文献2：昆巴约 JP, 萨帕塔 FA. 2018 热带东太平洋珊瑚礁的虾虎鱼清洁互作. 《鱼类生物学杂志》. DOI:10.1111/jfb.13573. 文件：Malpelo.csv 参考文献：昆巴约 JP, 迪亚斯 MS, 施利克曼 OC, 门德斯 TC. 2017 热带东太平洋偏远岛屿的鱼类清洁互作. 《海洋生物多样性》, 47: 603–608. --- 用于复现分析的所有R代码可向作者索取。 如有其他疑问，请联系通讯作者胡安·P·昆巴约（邮箱：quimbayo.j.p@gmail.com）。 本数据集的发布并不免除数据使用者遵守学术传播的社区规范，尤其是需按照前文要求引用本论文与原始数据的作者。
