Additional file 2 of Chromosome-length genome assembly and structural variations of the primal Basenji dog (Canis lupus familiaris) genome

Additional file 2: Supplementary Table 1. Assembly statistics for China assembly stages and other dog genomes used in the study. Supplementary Table 2. Diploidocus statistics and ratings for China scaffolds during tidying. Supplementary Table 3. GeMoMa summary statistics and annotation comparisons. Supplementary Table 4. AMY2B short read mapping and estimated copy number in Basenji dogs. Supplementary Table 5. CanFam_Bas nuclear mitochondrial sequence (NUMT) fragments. Supplementary Table 6. CanFam_Bas nuclear mitochondrial sequences (NUMTs) merging fragments within 8 kb. Supplementary Table 7. Structural variant calls for Basenji and German Shepherd long read data versus three reference genomes. Supplementary Table 8. Dog breeds used for read mapping and SNV analysis. Supplementary Table 9. SRA runs for representative dog breeds from DBVDC.

附加文件2：补充表1。本研究所用中国组装阶段及其他犬类基因组的组装统计信息。
补充表2。序列支架（scaffolds）整理过程中，中国相关支架的Diploidocus统计结果与评级。
补充表3。GeMoMa汇总统计数据及注释比对结果。
补充表4。巴仙吉犬（Basenji）的AMY2B基因短读长比对及拷贝数估计结果。
补充表5。CanFam_Bas核线粒体序列（nuclear mitochondrial sequence, NUMT）片段。
补充表6。对8kb范围内的CanFam_Bas核线粒体序列（NUMTs）片段进行合并的相关统计。
补充表7。巴仙吉犬与德国牧羊犬的长读长测序数据，相较于3个参考基因组的结构变异调用结果。
补充表8。用于读长比对与单核苷酸变异（single nucleotide variant, SNV）分析的犬品种列表。
补充表9。来自DBVDC的代表性犬品种的序列读取档案（Sequence Read Archive, SRA）运行数据。