Additional file 2 of Single-cell transcriptomic and chromatin accessibility analyses of dairy cattle peripheral blood mononuclear cells and their responses to lipopolysaccharide

Additional file 2: Table S1. Summary of scRNA-seq and scATAC-seq dataset. Table S2. Marker genes of each cell type. Table S3. Cattle PBMC cell type annotation under three resolutions using Azimuth. Table S4. Cattle PBMC cell type annotation using SingleR. Table S5. The expression of 93 cell cycle-related genes in each cell. Table S6. The summary information of TF identified by SCENIC. Table S7. Single cell’s pseudotime value obtained from Monocle2. Table S8. Gene list of each module identified by WGCNA. Table S9. Enrichment results of each module identified by WGCNA.附加文件2：表S1。单细胞RNA测序（single-cell RNA sequencing, scRNA-seq）与单细胞转座酶可及性测序（single-cell assay for transposase-accessible chromatin sequencing, scATAC-seq）数据集汇总信息。表S2。各细胞类型的标记基因。表S3。基于三种分辨率下使用Azimuth注释的牛外周血单个核细胞（peripheral blood mononuclear cell, PBMC）细胞类型注释结果。表S4。使用SingleR注释的牛外周血单个核细胞细胞类型注释结果。表S5。93个细胞周期相关基因在各细胞中的表达水平。表S6。通过SCENIC鉴定得到的转录因子（transcription factor, TF）汇总信息。表S7。通过Monocle2获取的单细胞拟时间值。表S8。通过加权基因共表达网络分析（Weighted Gene Co-expression Network Analysis, WGCNA）鉴定得到的各模块基因列表。表S9。通过WGCNA鉴定得到的各模块富集分析结果。