Genetic data (gene haplotypes and microsatellite genotypes) and geographic sampling locations for each isolate
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资源简介:
Genetic data (gene haplotypes and microsatellite genotypes) and geographic sampling locations for the 108 Plasmopara viticola isolates.
Column description:
Isolate_ID: unique isolate identifier
Lat: latitude in decimal degrees
Long: longitude in decimal degrees
Wine_region: region of origin
Trait_data: indicates whether quantitative traits were recorded for this isolate (see the « PV_trait_data.txt » file)
Fungicide_category: resistance to CAA and QoI fungicides
cytb_hap: cytochrome b haplotype. Names follow Chen et al. 2007
CesA3_short_hap1 & 2: CesA3 (short fragment) haplotypes
CesA3_long_hap1 & 2: CesA3 (long fragment) haplotypes
The last 23 columns give the allele sizes for the amplified microsatellite loci (1 column per locus, each allele is coded by a 3 digit number).
Missing data are encoded by "999".
本数据集包含108株葡萄霜霉菌(Plasmopara viticola)分离物的遗传数据(基因单倍型与微卫星基因型)及地理采样位点信息。
字段说明如下:
Isolate_ID:分离物唯一标识符
Lat:以十进制度表示的纬度
Long:以十进制度表示的经度
Wine_region:采样来源的葡萄酒产区
Trait_data:标注该分离物是否已记录数量性状(详见《PV_trait_data.txt》文件)
Fungicide_category:该分离物对CAA类及QoI类杀菌剂的抗性表现
cytb_hap:细胞色素b(cytochrome b)单倍型,命名规范遵循Chen等人2007年的研究
CesA3_short_hap1 & 2:CesA3(短片段)单倍型1与单倍型2
CesA3_long_hap1 & 2:CesA3(长片段)单倍型1与单倍型2
最后23列为扩增得到的微卫星位点的等位基因长度(每个位点对应1列,等位基因以3位数字编码)。缺失数据以“999”进行编码。
创建时间:
2017-01-06



