Digital Kennison: Y-linked scaffold identifiers (gi_list files) from YGS analysis of the Kennison X-Y translocation panel

YGS-derived scaffold identifier lists ("gi_list" files) for the eight strains of the Kennison X-Y translocation panel of Drosophila melanogaster. Each file lists the identifiers of scaffolds with high PVSC_UK values (percentage of valid single-copy k-mers unmatched by female reads), a YGS metric indicating Y-chromosomal linkage. These lists were used to curate the Kennison deficiency-panel BLAST databases (https://doi.org/10.5281/zenodo.21280260) by filtering the SPAdes assemblies of each translocation strain to retain only YGS-supported Y-linked contigs. The Digital Kennison pipeline can consume these files via the --y_linked_gi_dir argument, applying the same filtering to user-supplied assemblies when the --Y_linked option is enabled. Contents:kl1minus_y_linked_gis.txt kl2minus_y_linked_gis.txt kl3minus_y_linked_gis.txt kl5minus_y_linked_gis.txt ks1minus_y_linked_gis.txt ks2minus_y_linked_gis.txt Yd_Xp_V8_y_linked_gis.txt Yd_Xp_V24_y_linked_gis.txt Related resources: - Pipeline code: https://doi.org/10.5281/zenodo.21271417 - BLAST databases: https://doi.org/10.5281/zenodo.21280260 - Prefiltered reads: https://doi.org/10.5281/zenodo.21284274