Transcription factors significantly differentially expressed in the leaves of both mosaic trees.
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Genes above the horizontal line are significantly differentially regulated in both species, and those below the line are only significantly differentially regulated in one species. LG refers to the linkage group on which the gene is found in the E. grandis genome (Joint-Genome-Institute 2006–2013), binding domain denotes which binding domains are found in the sequence and therefore which transcription factor family each gene belongs to (Joint-Genome-Institute 2006–2013); the logFC column contains log fold change values, with a positive number representing an over-abundance of this transcript in the leaves of the resistant branch, and a negative number representing an over-abundance of this transcript in the leaves of the susceptible branch; gene name shows the name of the gene the transcript matches, using the Eucalyptus grandis genome annotations in phytozome (Joint-Genome-Institute 2006–2013). The transcription factor families are B3: B3 DNA binding domain; bZIP: basic leucine zipper domain; CBF: C-repeat binding factor; HEX: hematopoietically-expressed homeobox protein; AP2: activating protein 2; GRAS: gibberellic-acid insensitive (GAI), repressor of GAI (RGA) and SCARECROW (SCR); MYB: MYB proto-oncogene protein; NAM: No apical meristem protein; SRF: serum response factor; HSF: heat shock factor; Sigma: Sigma factor, a plastidal RNA polymerase cofactor; WRKY: W-box binding domain containing amino acid sequence WRKY.Transcription factors significantly differentially expressed in the leaves of both mosaic trees.
水平线以上的基因在两个物种中均呈现显著差异调控,水平线以下的基因仅在单个物种中呈现显著差异调控。LG即连锁群(Linkage Group),指代巨桉(Eucalyptus grandis)基因组中基因所在的连锁区域,相关注释由联合基因组研究所(Joint-Genome-Institute)于2006–2013年发布;结合域(binding domain)用于指示序列中存在的结合域类型,据此可确定每个基因所属的转录因子家族,相关注释同样来自联合基因组研究所(Joint-Genome-Institute)2006–2013年的成果;logFC列包含对数折叠变化(log fold change, logFC)值,其中正值代表该转录本在抗病枝条的叶片中富集,负值则代表该转录本在感病枝条的叶片中富集;基因名称列显示该转录本所匹配的基因名称,数据来源于phytozome数据库中的巨桉基因组注释,该注释由联合基因组研究所(Joint-Genome-Institute)2006–2013年完成。本数据集涉及的转录因子家族包括:B3:B3 DNA结合域;bZIP:碱性亮氨酸拉链域;CBF:C-重复结合因子;HEX:造血同源盒蛋白;AP2:激活蛋白2;GRAS:赤霉素不敏感蛋白(GAI)、GAI阻遏物(RGA)及SCARECROW(SCR)家族;MYB:MYB原癌基因蛋白;NAM:无顶端分生组织蛋白;SRF:血清反应因子;HSF:热休克因子;Sigma:Sigma因子,一种质体RNA聚合酶辅助因子;WRKY:包含WRKY氨基酸序列的W盒结合域蛋白。本数据集收录了两株镶嵌型树木叶片中显著差异表达的转录因子相关数据。



