Additional file 1 of A high-resolution genotype–phenotype map identifies the TaSPL17 controlling grain number and size in wheat

Additional file 1: Table S1. Summary of the 306 worldwide wheat accessions. Table S2. Diversity and genetic structure analyses of the 306 wheat accessions. Table S3. The determination of linkage disequilibrium (r2) in this study. Table S4. The heritability of 27 traits in this study. Table S5. The effects of genotype, environment, genotype ✖ environment interaction and heritability for the 27 traits in this study. Table S6. Overview of the 27 spike morphology traits in this study. Table S7. Detailed information of all significant associated SNPs for the investigated traits (-log10[P value] > 5.00). Table S8. Detailed information of all genomic intervals for the investigated traits. Table S9. The effects of 392 genomic intervals associated with assimilate partitioning for the grain yield traits. Table S10. The expression of candidate genes (FPKM). Table S11. The distance between lead SNPs and TraesCS7A02G246500. Table S12. Targeted mutagenesis of TaSPL17 in different mutant lines. Table S13. The phenotypic data of knock out lines in this study. Table S14. The phenotypic data of overexpression lines in this study. Table S15. Overview of spike morphology traits among the haplotypes of TaSPL17. Table S16. The differences of spike morphology traits among the haplotypes of TaSPL17. Table S17. Worldwide distribution of the three major haplotypes of TaSPL17-A. Table S18. The percentage of worldwide distribution of the three major haplotypes of TaSPL17-A. Table S19. The Hap-A2 information of TaSPL17-A in 306 wheat accession. Table S20. The percentage of the three major haplotypes of TaSPL17-A in different regions. Table S21. The distribution of the twelve major haplotypes of TaSPL17-A in 799 Chinese wheat accessions. Table S22. The percentage of the three major haplotypes of TaSPL17-A in 799 Chinese wheat accessions. Table S23. The linkage disequilibrium (r2) between lead SNPs and haplotype SNPs. Table S24. The identified SNPs of TaSPL17-A by Sanger sequencing. Table S25. The distribution of the four major haplotypes of TaSPL17-B in different areas. Table S26. The distribution of the four major haplotypes of TaSPL17-B in different areas. Table S27. The results of permutation test. Table S28. Primers used in this study.附加文件1：表S1。全球306份小麦种质资源汇总。表S2。306份小麦种质资源的多样性与遗传结构分析。表S3。本研究中连锁不平衡（linkage disequilibrium, r²）的测定结果。表S4。本研究中27个性状的遗传力。表S5。27个性状的基因型、环境、基因型×环境互作效应及遗传力。表S6。本研究中27个穗部形态性状概述。表S7。供试性状的所有显著关联SNP详细信息（-log₁₀[P值]＞5.00）。表S8。供试性状的所有基因组区间详细信息。表S9。与籽粒产量性状同化物分配相关的392个基因组区间的效应。表S10。候选基因的表达量（FPKM）。表S11。领头SNP与TraesCS7A02G246500的间距。表S12。不同突变株系中TaSPL17的靶向诱变情况。表S13。本研究中敲除株系的表型数据。表S14。本研究中过表达株系的表型数据。表S15。TaSPL17单倍型间穗部形态性状概况。表S16。TaSPL17单倍型间穗部形态性状的差异。表S17。TaSPL17-A三种主要单倍型的全球分布。表S18。TaSPL17-A三种主要单倍型的全球分布占比。表S19。306份小麦种质中TaSPL17-A的Hap-A2信息。表S20。不同区域TaSPL17-A三种主要单倍型的占比。表S21。799份中国小麦种质中TaSPL17-A的12种主要单倍型分布。表S22。799份中国小麦种质中TaSPL17-A三种主要单倍型的占比。表S23。领头SNP与单倍型SNP间的连锁不平衡（r²）。表S24。经Sanger测序鉴定的TaSPL17-A SNPs。表S25。不同区域TaSPL17-B四种主要单倍型的分布。表S26。不同区域TaSPL17-B四种主要单倍型的分布。表S27。置换检验结果。表S28。本研究所用引物。