Additional file 2 of Identification of homozygous haplotypes carrying putative recessive lethal mutations that compromise fertility traits in French Lacaune dairy sheep

Additional file 2: Table S1. Clustering HHD in LDHH regions. Table S1 shows all significant haplotypes of 20 markers (i.e., 266 HHD with frequency > 1%, P-value < 1.9 × 10−4 and deficit ≥ 75%). As described in the “Methods” section, the 266 HHD could be associated with 11 LDHH regions which are shown in green. Table S2. SNPs defining the LDHH regions. Table S2 gives the position of each SNP within LDHH regions according to the sheep reference genome v2.0 and v3.1, and the phased alleles of each deficient haplotype.

附加文件2：表S1。LDHH区域中的HHD聚类分析。表S1列出了20个标记的所有显著单倍型，即266个单倍型缺失差异（Haplotype Deficit Difference，HHD），其频率>1%、P值<1.9×10⁻⁴且缺失率≥75%。正如“方法”部分所述，这266个HHD可与11个以绿色标注的连锁不平衡单倍型岛（Linkage Disequilibrium Haplotype Island，LDHH）区域相关联。表S2：定义LDHH区域的单核苷酸多态性（Single Nucleotide Polymorphism，SNP）。表S2给出了基于绵羊参考基因组v2.0和v3.1版本的LDHH区域内每个SNP的位置，以及每个缺失单倍型的分型等位基因。