Slidescans: p161

This repository constains all the slidescans associated with slide block p161 for the project: "A quantitative analysis of the interplay of environment, neighborhood and cell state in 3D spheroids" https://www.biorxiv.org/content/10.1101/2020.07.24.219659v1 Each acquisition follows the naming scheme: "{operator}_{date}_{slideblock}_{slidenr}{suffix}" e.g. v.zanotelli_20190509_p161_025.czi Each acquisition has 3 files: - suffix='.czi': main slidescan - suffix='_pt1.czi': slide label scan - suffix='_pt2.csi': coarse slide overview scan Each 'main slidescan' is usually composed of multiple 'Scenes', corresponding to regions scanned with high resolution. The convention is that each scene corresponds to unique cut that is independently stained and processed. Note that scene numbering does not necessarily follows a logical order. The slidescans were acquired using an AxioScan A1 <br>本仓库包含与项目"三维球体中环境、微环境与细胞状态间相互作用的定量分析"（A quantitative analysis of the interplay of environment, neighborhood and cell state in 3D spheroids）相关的玻片块（slide block）p161的所有玻片扫描图像（slidescan），该项目的预印本链接为：https://www.biorxiv.org/content/10.1101/2020.07.24.219659v1。 所有采集文件均遵循如下命名规则："{operator}_{date}_{slideblock}_{slidenr}{suffix}"，示例为v.zanotelli_20190509_p161_025.czi。 每份采集对应三个文件： - 后缀为.czi的文件：主玻片扫描图像（main slidescan） - 后缀为_pt1.czi的文件：玻片标签扫描图像 - 后缀为_pt2.csi的文件：玻片粗览扫描图像 每份主玻片扫描图像通常由多个场景（Scenes）组成，对应高分辨率扫描的区域。按照约定，每个场景对应一块独立完成染色与处理的切片。需注意：场景编号未必遵循逻辑顺序。 所有玻片扫描图像均通过AxioScan A1采集完成。