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Averaged total interaction energy between nucleotide substrates and RNases.

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Figshare2019-08-08 更新2026-04-29 收录
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The total interaction energy (Etotal) was computed as a sum of van der Waals (Evdw) and electrostatics (Eel) energy, averaged over 2,000 snapshots (see Methods for details). Difference >5 kcal/mol in Etotal is considered significant for preference of substrate ACAC and AUAU binding to the same RNase; such cases are underlined. Note that the case of bRNaseA-ACAC at 300 K is close to this criterion (5.1 kcal/mol) but is not marked. The repulsive Evdw observed in case of hRNase7-AUAU at 310 K is marked in bold.

总相互作用能(total interaction energy, Etotal)被计算为范德华能(van der Waals, Evdw)与静电能(electrostatics, Eel)的加和,并基于2000个构象快照取平均值,具体计算方法参见“方法”部分。当总相互作用能差值大于5 kcal/mol时,即可判定底物ACAC与AUAU对同一核糖核酸酶(RNase)的结合偏好存在显著差异,此类情形将被标记下划线。需注意,300 K条件下的bRNaseA-ACAC体系,其能量差值接近该判定标准(5.1 kcal/mol),但未被标记。310 K条件下的hRNase7-AUAU体系中观测到的排斥性范德华相互作用,则以粗体格式标注。

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2019-08-08
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