Clustering of telomeric motif-1 occurences and comparison with A/B subgenomes
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All motif-1 occurrences of the 3 species (Minc, Mjav, Mare) were clustered at 99.9% identity using CD-HIT and clustering results were cross-referenced with A/B subgenomes assignments. Sheet 1: The 52 clusters with information of the species and contig of origin as well as positions on the contigs. Sheet 2: Distribution of Minc motif-1 occurrences across the clusters with information of A/B subgenome of origin. Sheet 3: Sheet 2: Distribution of Mare motif-1 occurrences across the clusters with information of A/B subgenome of origin. Sheet 4: Distribution of Mjav motif-1 occurrences across the clusters with information of A/B subgenome of origin. Sheet 5: Cross-species motif-1 occurrences across the clusters with information of A/B subgenome of origin. Sheet 6: Distribution of species per cluster
针对3个物种(Minc、Mjav、Mare)的所有基序-1(motif-1)匹配位点,以99.9%的序列一致性阈值通过CD-HIT工具完成聚类,并将聚类结果与A/B亚基因组(A/B subgenome)的分配信息进行交叉验证。
工作表1:包含52个聚类的相关信息,涵盖其所属物种、来源重叠群(contig)以及重叠群上的位置坐标。
工作表2:展示Minc的基序-1匹配位点在各聚类中的分布情况,附带其所属A/B亚基因组的信息。
工作表3:展示Mare的基序-1匹配位点在各聚类中的分布情况,附带其所属A/B亚基因组的信息。
工作表4:展示Mjav的基序-1匹配位点在各聚类中的分布情况,附带其所属A/B亚基因组的信息。
工作表5:展示跨物种的基序-1匹配位点在各聚类中的分布情况,附带其所属A/B亚基因组的信息。
工作表6:展示每个聚类对应的物种分布情况。
提供机构:
Recherche Data Gouv
创建时间:
2023-10-12



