Whole genome sequence variant discovery from Ethiopian Boran, N'Dama and Holstein cattle

Whole genome sequence variants (SNPs) from forty samples of each Ethiopian Boran, N'Dama and Holstein cattle breeds which were utilised in the Assessment of genotyping array performance for genome-wide association studies and imputation in African cattle study by Riggio et al., 2022, (in review). The NDama sequences included samples from Guinea (n =21), Nigeria (n =10) and Senegal (n = 9); and the Boran samples from Ethiopia (n = 30) and Kenya (n = 10). Variants discovery followed the protocol described in the Material and Method section of the paper.本数据集包含埃塞俄比亚博拉牛、恩达马牛及荷斯坦牛三个品种各40份样本的全基因组序列变异（单核苷酸多态性，Single Nucleotide Polymorphisms，SNPs），相关数据被用于Riggio等人2022年（审稿中）开展的《非洲牛全基因组关联研究及基因型填充的基因分型芯片性能评估》研究。其中恩达马牛的样本分别来自几内亚（n=21）、尼日利亚（n=10）及塞内加尔（n=9）；博拉牛样本则取自埃塞俄比亚（n=30）与肯尼亚（n=10）。变异检测流程严格遵循该论文材料与方法部分所描述的实验方案。