Matched Primary and Locally Recurrent Breast Tumors Distances at the Copy Number, RNA, and Protein levels

Copy number, RNA reads, and protein intensities -based inter-sample distance. "CN.distance" reports Cosine copy number-based pairwise distances between paired primary and locally recurrent breast cancers. "RNA.DISTANCE" and "PROTEIN.DISTANCE" reports RNA- and PROTEIN-based distance between the paired samples (as above).
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Distance was calculated with the following:
1 - Cosine similarity
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This dataset was used for Figure 4 in the following manuscript:
 "Proteogenomics decodes the evolution of human ipsilateral breast cancer". De Marchi T, Pyl PT, Sjöström M, Reinsbach SE, DiLorenzo S, Nystedt B, Tran L, Pekar G, Wärnberg F, Fredriksson I, Malmström P, Fernö M, Malmström L, Malmström J, Nimèus E. <em>accepted for publication</em>

基于拷贝数、RNA测序读数与蛋白质强度的样本间距离。其中"CN.distance"报告配对原发性与局部复发性乳腺癌之间基于余弦拷贝数的两两样本距离；"RNA.DISTANCE"与"PROTEIN.DISTANCE"则报告上述配对样本间基于RNA与蛋白质的样本距离。
距离计算方式如下：1 - 余弦相似度（Cosine similarity）。
本数据集被用于下述已接收待发表论文的图4：《蛋白质基因组学解析人类同侧乳腺癌的演化》（Proteogenomics decodes the evolution of human ipsilateral breast cancer），作者包括De Marchi T、Pyl PT、Sjöström M、Reinsbach SE、DiLorenzo S、Nystedt B、Tran L、Pekar G、Wärnberg F、Fredriksson I、Malmström P、Fernö M、Malmström L、Malmström J、Nimèus E。