Manual organelle segmentations (crop386) in near-isotropic, reconstructed volume electron microscopy (FIB-SEM) of mouse liver acinus (jrc_mus-liver-zon-1)

This acquisition is part of the CellMap 2024 Segmentation Challenge
Challenge DOI: https://doi.org/10.25378/janelia.c.7456966Challenge Website: https://cellmapchallenge.janelia.org/Annotation description: Dense segmentations of peroxisome in jrc_mus-liver-zon-1 using Amira 3D 2021.1, Classic Segmentation Workroom and the 'Using Amira to manually segment organelles in vEM for machine learning V.3' annotation protocol.
Annotation ID: crop386
Primary Annotator: Diana Ramirez
Annotation protocol: Using Amira to manually segment organelles in vEM for machine learning V.3 (http://dx.doi.org/10.17504/protocols.io.bp2l61rb5vqe/v3)
Software: Amira 3D 2021.1, Classic Segmentation Workroom
Annotated voxel size (nm): 32 x 32 x 32 (x, y, z)
Annotated data dimensions (µm): 6.4 x 6.4 x 6.4 (x, y, z)
Annotated data offset (nm): 147212 x 57612 x 144012 (x, y, z)
Classes annotated: peroxisome
Dataset URL: s3://janelia-cosem-datasets/jrc_mus-liver-zon-1/jrc_mus-liver-zon-1.zarr/recon-1/labels/groundtruth/crop386
Source (EM) dataset ID: jrc_mus-liver-zon-1
Source (EM) voxel size (nm): 8 x 8 x 8 (x, y, z)
Source (EM) data dimensions (µm): 397.16 x 171.61 x 188.81 (x, y, z)
Source (EM) DOI: https://doi.org/10.25378/janelia.24128700
Visualization website: https://openorganelle.janelia.org/datasets/jrc_mus-liver-zon-1
Publication: CellMap Segmentation Challenge, 2024.
The CellMap Project Team during this time consisted of: David Ackerman, Davis Bennett, Marley Bryant, Hannah Nguyen, Grace Park, Alyson Petruncio, Alannah Post, Jacquelyn Price, Diana Ramirez, Jeff Rhoades, Rebecca Vorimo, Aubrey Weigel, Marwan Zouinkhi, Yurii Zubov.
The CellMap Project Team Steering Committee during this time consisted of: Misha Ahrens, Christopher Beck, Teng-Leong Chew, Daniel Feliciano, Jan Funke, Harald Hess, Wyatt Korff, Jennifer Lippincott-Schwartz, Zhe J. Liu, Kayvon Pedram, Stephan Preibisch, Stephan Saalfeld, Ronald Vale, and Aubrey Weigel.

本数据集隶属于CellMap 2024 分割挑战赛（CellMap 2024 Segmentation Challenge）。
挑战赛DOI：https://doi.org/10.25378/janelia.c.7456966
挑战赛官网：https://cellmapchallenge.janelia.org/
注释说明：针对jrc_mus-liver-zon-1样本中的过氧化物酶体，采用Amira 3D 2021.1、经典分割工作室（Classic Segmentation Workroom）以及《用于机器学习的体积电子显微镜细胞器手动分割 V.3》注释协议完成全密度分割。
注释ID：crop386
主要注释人员：戴安娜·拉米雷斯（Diana Ramirez）
注释协议：《用于机器学习的体积电子显微镜细胞器手动分割 V.3》（http://dx.doi.org/10.17504/protocols.io.bp2l61rb5vqe/v3）
所用软件：Amira 3D 2021.1、经典分割工作室
标注体素尺寸（纳米）：32 × 32 × 32（x、y、z轴）
标注数据尺寸（微米）：6.4 × 6.4 × 6.4（x、y、z轴）
标注数据偏移量（纳米）：147212 × 57612 × 144012（x、y、z轴）
注释类别：过氧化物酶体
数据集URL：s3://janelia-cosem-datasets/jrc_mus-liver-zon-1/jrc_mus-liver-zon-1.zarr/recon-1/labels/groundtruth/crop386
源电子显微镜数据集ID：jrc_mus-liver-zon-1
源电子显微镜体素尺寸（纳米）：8 × 8 × 8（x、y、z轴）
源电子显微镜数据尺寸（微米）：397.16 × 171.61 × 188.81（x、y、z轴）
源电子显微镜DOI：https://doi.org/10.25378/janelia.24128700
可视化网站：https://openorganelle.janelia.org/datasets/jrc_mus-liver-zon-1
相关出版物：《CellMap 2024分割挑战赛》（CellMap Segmentation Challenge, 2024）
本次项目团队成员包括：David Ackerman、Davis Bennett、Marley Bryant、Hannah Nguyen、Grace Park、Alyson Petruncio、Alannah Post、Jacquelyn Price、戴安娜·拉米雷斯（Diana Ramirez）、Jeff Rhoades、Rebecca Vorimo、Aubrey Weigel、Marwan Zouinkhi、Yurii Zubov。
本次项目指导委员会成员包括：Misha Ahrens、Christopher Beck、Teng-Leong Chew、Daniel Feliciano、Jan Funke、Harald Hess、Wyatt Korff、Jennifer Lippincott-Schwartz、Zhe J. Liu、Kayvon Pedram、Stephan Preibisch、Stephan Saalfeld、Ronald Vale及Aubrey Weigel。