Variant Site Strain Typer (VaST): Efficient strain typing using a minimal number of variant genomic sites

This repository contains the matrices used to build the minimum spanning sets for <i>Yersenia pestis, Bacillus anthracis, </i><i>Escherichia</i><i> coli, Burkholderia pseudomallei, and Francisella tularensis. </i>The target sites identified for resolving each strain complex is also provided in the haplotype files. The loci used for the truncated, experimentally-validated panel are also listed. <br>本仓库包含用于构建耶尔森菌（Yersenia pestis）、炭疽芽孢杆菌（Bacillus anthracis）、大肠埃希菌（Escherichia coli）、类鼻疽伯克霍尔德菌（Burkholderia pseudomallei）以及土拉弗朗西斯菌（Francisella tularensis）最小生成集的矩阵。用于区分各菌株复合群的靶位点信息也已收录于单倍型文件中。经实验验证的截短分型组合所使用的基因座也已列明。