TWAS Weights from OTTERS framework
收藏资源简介:
This repoistory includes the TWAS xQTL weights for brain and immune cell tissues across ROSMAP and publicly available data. Weights from for ROSMAP include eQTL, pQTL and sn-eQTLs. Weights for validation include GTEx v7 eQTL, BANNER pQTL, and sn-eQTL from Bryois et al 2022 10.1038/s41593-022-01128-z Weights for sc-eQTL include DICE and oneK1K data
本仓库收录了覆盖ROSMAP队列(Religious Orders Study and Memory and Aging Project)及公开数据集的脑与免疫细胞组织的全转录组关联分析(Transcriptome-Wide Association Study, TWAS)xQTL权重文件。 ROSMAP队列对应的权重文件涵盖表达数量性状位点(expression Quantitative Trait Loci, eQTL)、蛋白数量性状位点(protein Quantitative Trait Loci, pQTL)以及单核转录组数量性状位点(sn-eQTL)三类数据。 用于模型验证的权重文件包含基因型-组织表达(Genotype-Tissue Expression, GTEx)v7版本的eQTL、BANNER pQTL,以及Bryois等人2022年发表于DOI:10.1038/s41593-022-01128-z的sn-eQTL数据。 针对单细胞表达数量性状位点(single-cell expression Quantitative Trait Loci, sc-eQTL)的权重文件涵盖DICE及oneK1K两类数据集。



