Wakhan: reconstruction of chromosome-scale copy number profiles of tumor genomes with long-read sequencing

Supplementary data for the paper "Wakhan: reconstruction of chromosome-scale copy number profiles of tumor genomes with long-read sequencing" tools_cmd - command lines and relevant scripts for running all tools benchmarking - CNA profiles and scripts used for benchmarking cna_profiles_visualization_castle - Chromosome profiles visualization for all tools for the CASTLE cell lines castle_benchmarks - Outputs and benchmarking scores for all tools on the CASTLE datasets breast_cell_lines - Wakhan outputs for the breast cancer cell lines panel downsampled_HCC1954 - Outputs and benchmarking scores for all tools on the downsampled HCC1954 datasets downsampled_H1437 - Outputs and benchmarking scores for all tools on the downsampled H1437 datasets论文《Wakhan：基于长读长测序重构肿瘤基因组染色体级拷贝数谱》的补充数据 tools_cmd：用于运行所有工具的命令行及相关脚本 benchmarking：基准测试所用的拷贝数变异（CNA, Copy Number Alteration）谱及脚本 cna_profiles_visualization_castle：针对CASTLE细胞系的所有工具的染色体谱可视化结果 castle_benchmarks：所有工具在CASTLE数据集上的输出结果及基准测试得分 breast_cell_lines：针对乳腺癌细胞系面板的Wakhan工具输出结果 downsampled_HCC1954：所有工具在降采样HCC1954数据集上的输出结果及基准测试得分 downsampled_H1437：所有工具在降采样H1437数据集上的输出结果及基准测试得分