Supplementary Data for: Integrated multiomics reveals stable microbe–metabolite relationships in paediatric coeliac disease

Supplementary Data 1: MintTea module analysis: parameters, species and genus inputs, and grid searches. Supplementary Data 2: All NMR contrasts and PERMANOVA analysis. Supplementary Data 3: All GC-MS contrasts and PERMANOVA analysis. Supplementary Data 4: MintTea single comparison (untreatred vs controls) analysis at both species and genus level. Supplementary Data 5: Glmnet analysis: specis and genus performance, top features, confusion metrics, out-of-fold prediction analysis, and permutation summaries.补充数据1：MintTea模块分析：参数、物种与属水平输入及网格搜索。 补充数据2：全部核磁共振（Nuclear Magnetic Resonance, NMR）对比分析与置换多元方差分析（PERMANOVA）。 补充数据3：全部气相色谱-质谱联用（Gas Chromatography-Mass Spectrometry, GC-MS）对比分析与置换多元方差分析（PERMANOVA）。 补充数据4：MintTea单组对比（未处理组与对照组）分析：覆盖物种与属两个水平。 补充数据5：Glmnet分析：物种与属水平模型性能、关键特征、混淆矩阵、折外预测分析及置换汇总结果。