Effect of iron supplementation -- biom table
收藏资源简介:
The biom table was generated using Qiime 1.8.0 using uclust reference based OTU picking against greengene database (gg_13_8). otu_table_filtered.biom was filtered from the biom table by the following script: filter_otus_from_otu_table.py -i otu_table.biom -o otu_table_filtered.biom -n 10 -s 2 n= The minimum total observation count of an otu for that otu to be retained,s = The minimum number of samples an OTU must be observed in for that otu to be retained
本数据集所用的BIOM数据表(biom table)通过QIIME 1.8.0版本生成,采用uclust算法,以Greengene数据库(gg_13_8)作为参考序列库,开展基于参考序列的操作分类单元(Operational Taxonomic Unit,简称OTU)聚类分析。 研究人员通过下述脚本从原始BIOM数据表(otu_table.biom)中过滤得到目标过滤后OTU数据表(otu_table_filtered.biom): filter_otus_from_otu_table.py -i otu_table.biom -o otu_table_filtered.biom -n 10 -s 2 其中参数`-n`用于指定需保留的OTU所需的最小总观测计数,参数`-s`用于指定该OTU需被观测到的最小样本数量。




