Additional file 3 of Whole genome phylogeny of Gallus: introgression and data-type effects

Additional file 3: One sheet (Gene tree counts): The graph presents the expected counts of gene trees given the coalescent branch lengths in the ASTRAL trees (GT = ASTRAL tree based on gene trees; TV = ASTRAL tree based on perfect transversions); the other sheet (Data type info): The graph presents the expected frequencies of each gene tree topology given the GT ASTRAL tree and the observed frequencies of each gene tree after subdividing trees by their source (exon, intron, or UCE).

附加文件3：包含两个工作表：其一为（基因树计数表）：该图表展示了基于ASTRAL树中的溯祖分支长度计算得到的基因树期望计数（GT = 基于基因树构建的ASTRAL树；TV = 基于完全颠换构建的ASTRAL树）；其二为（数据类型信息表）：该图表展示了给定GT ASTRAL树时，各基因树拓扑结构的期望频率，以及按来源（外显子、内含子或超保守元件（Ultra-Conserved Elements, UCE））对树进行分组后，各基因树的观测频率。