Additional file 2 of Tuning transcription factor DegU for developing extracellular protease overproducer in Bacillus pumilus

Supplementary Material 2. Additional file 2. Table S1. The differentially expressed genes in B. pumilus SCU11 ∆hpr relative to SCU11 ∆hpr∆degU (24 h); Table S2. The differentially expressed genes in B. pumilus 62 A relative to SCU11 ∆hpr∆degU (24 h); Table S3. The differentially expressed genes clusters between DegU(WT) and DegU(L113F) (24 h); Table S4. The up-regulated genes in 62 A relative to ∆hpr (12 h); Table S5. The up-regulated genes in 62 A relative to ∆hpr (24 h); Table S6. The up-regulated genes in 62 A relative to ∆hpr (36 h); Table S7. The down-regulated genes in 62 A relative to ∆hpr (12 h); Table S8. The down-regulated genes in 62 A relative to ∆hpr (24 h); Table S9. The down-regulated genes in 62 A relative to ∆hpr (36 h); Table S10. The enrichment pathways of the differentially expressed genes by KEGG analysis in 62 A relative to ∆hpr (12 h); Table S11. List of major primers used in the article.

补充材料2. 附加文件2. 表S1：与SCU11 ΔhprΔdegU菌株（培养24小时）相比，短小芽孢杆菌（Bacillus pumilus）SCU11 Δhpr菌株的差异表达基因；表S2：与SCU11 ΔhprΔdegU菌株（培养24小时）相比，短小芽孢杆菌62 A菌株的差异表达基因；表S3：野生型（Wild Type，WT）DegU与DegU(L113F)突变体之间的差异表达基因簇（培养24小时）；表S4：与Δhpr菌株（培养12小时）相比，62 A菌株的上调表达基因；表S5：与Δhpr菌株（培养24小时）相比，62 A菌株的上调表达基因；表S6：与Δhpr菌株（培养36小时）相比，62 A菌株的上调表达基因；表S7：与Δhpr菌株（培养12小时）相比，62 A菌株的下调表达基因；表S8：与Δhpr菌株（培养24小时）相比，62 A菌株的下调表达基因；表S9：与Δhpr菌株（培养36小时）相比，62 A菌株的下调表达基因；表S10：62 A菌株与Δhpr菌株（培养12小时）相比，其差异表达基因经京都基因与基因组百科全书（Kyoto Encyclopedia of Genes and Genomes, KEGG）富集分析得到的通路；表S11：本文所用主要引物列表。