遇见数据集

H3K27ac Signal Track for H1376, PAEC (ECS), DHL4, and ARPE

收藏
Figshare2020-06-08 更新2026-04-08 收录
官方服务:

资源简介:

Genome-wide signal tracks for each sample were generated in two stages: (i) assess ChIP–seq quality and obtain the predominant fragment length using phantompeakqualtools (https://code.google.com/archive/p/phantompeakqualtools/); (ii) use align2rawsignal (https://code.google.com/archive/p/align2rawsignal/wikis/Method.wiki) to generate signal track (parameters: -n = 5, -k = epanechnikov, -l = [frag-ment length from step (i)], -w = 150, -f = 0).

所有样本的全基因组信号轨迹均通过两个阶段生成:(i) 利用phantompeakqualtools(https://code.google.com/archive/p/phantompeakqualtools/)评估ChIP-seq(染色质免疫共沉淀测序)质量,并获取优势片段长度;(ii) 使用align2rawsignal(https://code.google.com/archive/p/align2rawsignal/wikis/Method.wiki)生成信号轨迹,所用参数为:-n=5、-k=埃帕涅奇尼科夫核(epanechnikov)、-l=步骤(i)中得到的片段长度、-w=150、-f=0。

提供机构:
Rohith Srivas
创建时间:
2020-06-08
二维码
社区交流群
二维码
科研交流群
商业服务