five

SNV callers benchmarked in this study.

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https://figshare.com/articles/dataset/SNV_callers_benchmarked_in_this_study_/5490823
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The callers are labelled as the type of lineage they call. Germline denotes calling germline SNVs from a single (non-tumor) sample, tumor denotes calling any SNVs (germline and somatic) from a single tumor sample, and somatic denotes calling somatic SNVs from paired control-tumor samples. *GATK HaplotypeCaller, **GATK Unified Genotyper, ***JointSNVMix outputs both germline and somatic calls from paired control-tumor samples.
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2017-10-12
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