SH1042484.10FU

UNITE provides a unified way for delimiting, identifying, communicating, and working with DNA-based Species Hypotheses (SH). All fungal ITS sequences in the international nucleotide sequence databases are clustered to approximately the species level by applying a set of dynamic distance values (<0.5 - 3.0%). All species hypotheses are given a unique, stable name in the form of a DOI, and their taxonomic and ecological annotations are verified through distributed, web-based third-party annotation efforts. SHs are connected to a taxon name and its classification as far as possible (phylum, class, order, etc.) by taking into account identifications for all sequences in the SH. An automatically or manually designated sequence is chosen to represent each such SH. These sequences are released (https://unite.ut.ee/repository.php) for use by the scientific community in, for example, local sequence similarity searches and next-generation sequencing analysis pipelines. The system and the data are updated automatically as the number of public fungal ITS sequences grows.

UNITE数据库提供了一套统一的方法，用于界定、识别、交流以及处理基于DNA的物种假说（Species Hypotheses，SH）。国际核苷酸序列数据库中的所有真菌内部转录间隔区（Internal Transcribed Spacer，ITS）序列，均通过应用一组0.5%至3.0%的动态距离阈值被聚类至近似物种水平。所有物种假说均会被赋予一个唯一且稳定的数字对象标识符（Digital Object Identifier，DOI）格式的名称，其分类学与生态学注释信息将通过分布式的网络第三方注释工作完成验证。物种假说会尽可能结合该假说下所有序列的鉴定结果，关联至对应的分类单元名称及其所属分类层级（如门、纲、目等）。研究人员将选取一条自动或人工指定的序列，作为每个物种假说的代表序列。这些代表序列已发布于https://unite.ut.ee/repository.php，可供科学界用于本地序列相似性搜索、下一代测序分析流程等研究场景。随着公共真菌ITS序列数量的持续增长，该系统及其关联数据将自动进行更新。