Additional file 6 of Whole-genome sequencing of cryopreserved resources from French Large White pigs at two distinct sampling times reveals strong signatures of convergent and divergent selection between the dam and sire lines

Additional file 6. Functional enrichment for lists of genes within (or flanking) candidate regions under selection. Sheet 1. List of genes within or flanking candidate regions; region name and category are reported for each gene. Sheets 2–4. Enriched functions among genes from all selection categories, based on GOBP (sheet 2), KEGG (sheet 3) or MGI (sheet 4) databases. Sheet 5. Co-annotation enrichment among genes from the LWD, conv(LWD) and div categories. Sheet 6. Co-annotation enrichment among genes from the LWS, conv(LWS) and conv categories. P values were adjusted for multiple tests using the Benjamini–Hochberg correction (BH < 0.05). Co-annotation enrichment (sheets 5–6) was performed with Genecodi4 using the human genome as reference, merging annotations from GOBP, KEGG and MGI databases. The minimal number of genes used to find enrichment is given in brackets; this parameter is 2 or 3 according to the total number of genes per condition tested.

附加文件6：受选择候选区域内（或侧翼）基因列表的功能富集分析。工作表1：受选择候选区域内或侧翼的基因列表；每条基因均标注其所在区域名称与所属类别。工作表2至4：基于GOBP（工作表2）、KEGG（工作表3）及MGI（工作表4）数据库，对所有受选择类别基因的富集功能进行分析。工作表5：针对LWD、conv(LWD)与div类别基因开展共注释富集分析。工作表6：针对LWS、conv(LWS)与conv类别基因开展共注释富集分析。P值采用Benjamini-Hochberg（BH）校正法进行多重检验校正（BH<0.05）。共注释富集分析（工作表5至6）借助Genecodi4工具完成，以人类基因组为参考基因组，整合了GOBP、KEGG与MGI数据库的注释信息。用于富集分析的最小基因数量标注于括号内；根据各测试条件下的总基因数，该参数取值为2或3。