Additional file 3 of Genome-wide analyses of cassava Pathogenesis-related (PR) gene families reveal core transcriptome responses to whitefly infestation, salicylic acid and jasmonic acid

Additional file 3 PR gene expression after whitefly, SA and JA treatments of cassava. Table S3. log2FC and FDR values of DEGs identified in whitefly-susceptible genotypes (COL2246, COL1468, 60444, and TME3) after whitefly infestation. Table S4. log2FC and FDR values for PR genes detected in whitefly-susceptible genotypes after whitefly infestation. Table S5. Mean RPKM values of PR genes during whitefly infestation (0–22 dpi) of four whitefly-susceptible genotypes. Table S6. Read counts of PR genes during whitefly infestation (0–22 dpi) of four whitefly-susceptible genotypes. Table S7. log2FC and FDR values of DEGs in COL2246 after SA treatment. Table S8. log2FC and FDR values for PR genes detected in COL2246 after SA treatment. Table S9. Mean RPKM values for PR genes after SA treatment (0–24 h) of COL2246. Table S10. Read counts of PR genes after SA treatments (0–24 h) of COL2246. Table S11. log2FC and FDR values of DEGs in COL2246 after JA treatment. Table S12. log2FC and FDR values for PR genes detected in COL2246 after JA treatment. Table S13. Mean RPKM values for PR genes after JA treatment (0–24 h) of COL2246. Table S14. Read counts for PR genes after JA treatment (0–24 h) of COL2246.附加文件3：木薯在烟粉虱、水杨酸（SA，Salicylic Acid）和茉莉酸（JA，Jasmonic Acid）处理后的病程相关基因（PR，Pathogenesis-Related）表达情况。表S3：烟粉虱易感基因型（COL2246、COL1468、60444和TME3）在烟粉虱侵染后鉴定的差异表达基因（DEGs，Differentially Expressed Genes）的log2倍数变化（log2FC，log2 Fold Change）与错误发现率（FDR，False Discovery Rate）值。表S4：烟粉虱易感基因型在烟粉虱侵染后检测到的病程相关基因的log2FC与FDR值。表S5：四种烟粉虱易感基因型在烟粉虱侵染过程中（0~22 dpi，接种后天数，days post inoculation）病程相关基因的平均每百万映射reads的每千碱基转录本数（RPKM，Reads Per Kilobase per Million mapped reads）值。表S6：四种烟粉虱易感基因型在烟粉虱侵染过程中（0~22 dpi）病程相关基因的reads计数。表S7：COL2246在水杨酸（SA）处理后鉴定的差异表达基因的log2FC与FDR值。表S8：COL2246在水杨酸（SA）处理后检测到的病程相关基因的log2FC与FDR值。表S9：COL2246在水杨酸（SA）处理后（0~24 h）病程相关基因的平均RPKM值。表S10：COL2246在水杨酸（SA）处理后（0~24 h）病程相关基因的reads计数。表S11：COL2246在茉莉酸（JA）处理后鉴定的差异表达基因的log2FC与FDR值。表S12：COL2246在茉莉酸（JA）处理后检测到的病程相关基因的log2FC与FDR值。表S13：COL2246在茉莉酸（JA）处理后（0~24 h）病程相关基因的平均RPKM值。表S14：COL2246在茉莉酸（JA）处理后（0~24 h）病程相关基因的reads计数。