U-Probe: Data and probe sequences for universal agentic probe design validation
收藏资源简介:
This dataset accompanies the manuscript "U-Probe: Universal agentic probe design for imaging-based spatial-omics". Contents: data/images/MiP-seq/: Fluorescence microscopy images of mouse lung tissue sections (mock, H5N6-infected, H1N1-infected) for MiP-seq spatial transcriptomics validation. data/images/herpesvirus/: DNA-FISH images for feline herpesvirus (FHV), pseudorabies virus (PRV), and herpes simplex virus (HSV-1) detection in infected cells. data/images/mutation/: Fluorescence images for RCA-based single-nucleotide mutation detection of H9N2 avian influenza PB2 627E/K polymorphism. data/probes/: Designed probe sequences (CSV) for all experimental scenarios. Associated code: https://github.com/UFISH-Team/U-Probe Project homepage: https://www.u-probe.org/
本数据集配套学术手稿《U-Probe:面向成像型空间组学的通用智能探针设计》。 数据集内容: data/images/MiP-seq/:用于MiP-seq空间转录组学验证的小鼠肺组织切片(空白对照组、H5N6感染组、H1N1感染组)荧光显微镜图像。 data/images/herpesvirus/:用于感染细胞中猫疱疹病毒(FHV)、伪狂犬病病毒(PRV)及单纯疱疹病毒(HSV-1)检测的DNA荧光原位杂交(DNA-FISH)图像。 data/images/mutation/:用于基于RCA的H9N2禽流感PB2 627E/K多态性单核苷酸突变检测的荧光图像。 data/probes/:适配所有实验场景的设计探针序列(CSV格式文件)。 关联代码仓库:https://github.com/UFISH-Team/U-Probe 项目主页:https://www.u-probe.org/



