Dryobates pubescens (Downy Woodpecker) genome, bDryPub1, alternate haplotype. Dryobates pubescens isolate:bDryPub1

The downy woodpecker (Dryobates pubescens) is the smallest and most widespread woodpecker in North America. They are studied for their drumming behavior on trees. This assembly has been produced as part of the G10K-VGP and B10K projects. Sequencing was conducted with PacBio long reads, Bionano optical maps, and 10X Genomics libraries at the Rockefeller University Vertebrate Genomes Lab led by Olivier Fedrigo, HiC at Arima Genomics, and Illumina sequencing. Genome assembly was conducted by Olivier Fedrigo, and supervised by Arang Rhie, using the VGP 1.6 pipeline. The primary haplotype was assembled to chromosomes, whereas the alternate as contigs only. Raising funding and coordination for the project was done by Matthew Fuxjager. The raw data and assembly are currently under a G10K-VGP publication embargo until removed from this description, following the G10K data use policy at the following URL: https://genome10k.soe.ucsc.edu/data-use-policies/

绒啄木鸟（Dryobates pubescens）是北美体型最小且分布最广的啄木鸟物种。研究人员常针对其在树木上的击鼓行为展开相关研究。本基因组组装成果为G10K-VGP与B10K项目的组成部分。测序工作由奥利维耶·费德里戈（Olivier Fedrigo）领导的洛克菲勒大学脊椎动物基因组实验室（Rockefeller University Vertebrate Genomes Lab）完成，采用了PacBio长读长测序（PacBio long reads）、Bionano光学图谱（Bionano optical maps）及10X Genomics文库（10X Genomics libraries）技术；Arima Genomics提供了Hi-C测序服务，Illumina测序（Illumina sequencing）亦参与其中。基因组组装工作由奥利维耶·费德里戈主导完成，并在阿兰·里耶（Arang Rhie）的监督下，依托VGP 1.6流程（VGP 1.6 pipeline）进行。其中，单体型序列已组装至染色体水平，而交替单体型仅被组装为重叠群（contigs）。本项目的筹资与协调工作由马修·富克斯贾格（Matthew Fuxjager）负责。根据G10K数据使用政策（G10K data use policy），原始测序数据与基因组组装目前处于G10K-VGP项目的论文出版保密期内，直至本说明中的相关限制解除，具体政策可通过以下网址查询：https://genome10k.soe.ucsc.edu/data-use-policies/